I suppose you could log a warning, but I would just concatenate the
two together (with an empty line between them), giving priority to any
shorter comment that follows @var, since it's more likely to be a
summary. I.e. your example would get treated as though it looked
like this:
/**
* Here goes something relatively short, although in this case it is
longer
* than the long and boring comment
*
* There goes long and boring comment
* @var {Number} count
*/