I am not sure if I have understood your question, but perhaps this link will help you http://stackoverflow.com/questions/8115609/output-the-help-message-manually-with-jewelcli
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I think that you need to use this method:
http://jewelcli.lexicalscope.com/apidocs/com/lexicalscope/jewel/cli/Cli.html#getHelpMessage()
You can get the Cli instance from this class:
http://jewelcli.lexicalscope.com/apidocs/com/lexicalscope/jewel/cli/CliFactory.html
Does that answer the question?