Numpy and Scipy use issue

[PB]

Hi,

I am trying to use numpy and scipy in a script and i get below warnings when executing the script using multi threaded application using JEP. I dont see this when i run the script within python itself.

_frozen_importlib:222: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88

/usr/lib64/python3.5/importlib/_bootstrap.py:222: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88

  return f(*args, **kwds)

/usr/lib64/python3.5/importlib/_bootstrap.py:222: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88

  return f(*args, **kwds)

/usr/lib64/python3.5/importlib/_bootstrap.py:222: RuntimeWarning: numpy.dtype size changed, may indicate binary incompatibility. Expected 96, got 88

  return f(*args, **kwds)

It happens if i include below line in the script.

from scipy import special, optimize

And on few occassions i get 

jep.JepException: <class 'AttributeError'>: 'NoneType' object has no attribute 'CFUNCTYPE'

        at scipy/special/_ellip_harm_2.init scipy.special._ellip_harm_2 (scipy/special/_ellip_harm_2.c:7399)(_ellip_harm_2.pyx:30)

        at /usr/lib64/python3.5/site-packages/scipy/special/_ellip_harm.<module>(_ellip_harm.py:7)

        at /usr/lib64/python3.5/site-packages/scipy/special/__init__.<module>(__init__.py:643)

        at /apps/tmp/example.<module>(example.py:14)

I am new to this python world. Can someone help me on this?

thanks,

Pradeep V.B.

[Nathan Jensen]

I've never seen those errors before.  Just googling around, it appears they occur if scipy was compiled against a different version of numpy.  So I'd look into if Jep was compiled with a different version of numpy, or if you have multiple versions of Python installed.  It's possible it is picking up the wrong Python through PATH or LD_LIBRARY_PATH.

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[Yiding Zhang]

It's the issue of new numpy version (1.15.0)

You can downgrade numpy and this problem will be fixed:

sudo pip uninstall numpy

sudo pip install numpy==1.14.5