There are no settings in principle, if you included the correct functions in the HTML/JS.
But your study needs to be a .jzip file for JATOS to be able to import it. More importantly, this .jzip file contains information about the study properties that JATOS creates automatically. This is a common point of confusion. It's not enough to just zip all your files together, you need to Press the New Study button in the header of your local JATOS. Then edit the study properties and add new components manually. All source code for your study has to got into the study assets folder you defined in the the study properties. The study assets folder is usually located in your JATOS installation folder.
- create a new study
- create a new component (it sounds like you only have one)
- Provide the path to the HTML in the component properties
- Add your HTML (+ assets, including jQuery, etc) in the study assets folder.
Then you should be able to run it.
Or is this what you already did?