Query regarding the JASPAR enrichment analysis

[Promit Ganguly]

Dear JASPAR team,

I had a query regarding a line in the output section of the JASPAR enrichment documentation.

"In the three plots, the data sets for the top 10 TFs showing log10(p-value) < 3 are highlighted with dedicated colors (one colour per TF). Data sets with log10(p-value) > 3 are provided with a colour for N.S. (non-significant)."

Upon referring to the 3 plots provided in the documentation, it appears as though the coloured TFs have a log10(pvalue) > 3 and the non-significant TFs have log10(pvalue) < 3. Kindly let me know which one is to be followed. 

Additionally, 2 of the plots have Y-axis labelled as -log10(pvalue) while the enrichment ranking plot (the last interactive plot) has log10(pvalue) as the axis label. Upon the running the tool, the allEnrichments.tsv file gives pValueLog. 

Eagerly awaiting your response.

Thanks and regards,

Promit Ganguly