Hi,
i have a FASTA file with promoter sequences of genes of interest. How can I use JASPAR to download motifs of transcription factors (TFs) of interest which I then scan for in the promoter sequences?
I prefer usage over the command line but I am also fine with doing this on the web interface.
Does JASPAR offer motif scanning? Or can I just download the PWM of motifs of TFs of interest and do the scanning with another tool, e.g. FIMO?
Thank you for any answer!