MA1616.1 - Is It Mus Musculus or Homo Sapiens TFBS Data

19 views

Skip to first unread message

Ekaterina Khvatkova

unread,

Oct 31, 2024, 10:24:26 AM10/31/24

to JASPAR Q&A Forum

I noticed that the coordinate windows in the BED/FASTA files for this JASPAR profile have a human genome build label (hg38), but the species label on the web page is Mus Musculus. There are only 19 autosomes (chr1-chr19) found in these files which leads me to believe it is data from mice, but is mislabelled in the curated files.

Is there a separate place to report errors like this?

Ekaterina Khvatkova

unread,

Oct 31, 2024, 10:32:07 AM10/31/24

to JASPAR Q&A Forum

Also, it seems like MA1625.1 has the same issue where the file labels and the profile labels don't match

Anthony Mathelier

unread,

Nov 1, 2024, 11:49:43 AM11/1/24

to JASPAR Q&A Forum

Thanks for raising this issue. We will investigate and keep you posted.

Reply all

Reply to author

Forward

0 new messages