TFBS extraction tool vs. web scanning function

[Menglin Li]

Hi all, Thanks for developing this amazing database and analysis tool. I recently adapted the TFBS extraction tool provided to my data and I got a list of results with scores ranging (100-1000), I think this is scaled P-value? But when I use the web scan function to scan my sequence for certain TFs, I got scores showing the weights? Am I intepreting these scores right? And also, how can I convert the P-values to the weight scores? Thank you!

[Menglin Li]

I noticed there is another tool developed (https://github.com/wassermanlab/JASPAR-UCSC-tracks), I saw that to use the scan-sequence.py, I need to provide a fasta format file to get the TFBS predictions. Instead, I was wondering if I can just use a bed format files where I stored all the coordinates/regions? Thank you!