JASPAR Q&A Forum

I am interested in finding out how point mutations in enhancer sequences will affect the binding

I wonder if JASPAR have any downloadable table with the NAMES of TF families and classes that they

Thanks for raising this issue. Something is clearly wrong and we will try to fix as soon as possible.

I found that it would work properly when I entered a longer FASTA sequence. Thank you for your help!

Hi. The TF binding profiles are provided at the taxonomic group level; the species information are

Hi, Super, thank you for the link to the publication, I have started to explore it. I will contact

Dear Vedran. Thanks for your interest in JASPAR and your message. The CTCFL motif in JASPAR was

Dear Charlie. Thanks for your interest in JASPAR and for reaching out. You could theoretically run

Hi. Thanks for your interest in JASPAR. If you have the genomic coordinates of your promoter

Dear Gabriele. Thanks for your inquiry. There is no link between the JASPAR IDs and the associated

Dear Shang. Thanks for your inquiry. We recommend users to use the newest version of each profile as

Dear Maggie. Thanks for reaching out. We do not use pseudocounts in the TF binding profiles stored in

Dear Yochay. Thanks for pointing that out. The issue here comes from the fact that the first version

Hi Kelvin. Unfortunately, it does not look like we have kept this information; the data has been

Dear Gilles. Thanks for your interest in UniBind and your kind words. The TFBSs are indeed of high

Thank you so much Aziz. Very best, Tanay On Sat, Mar 16, 2024 at 6:01 AM azez...@gmail.com <azez.

Hi Rahul, JASPAR is not acronym, it is the database name. You can simply mention JASPAR database and

Dear Stephan, Thanks for your interest in JASPAR and for raising this question. Unfortunately, the

Dear Joaquina, Thanks for raising this issue. The server in Canada that is hosting the data is

Thanks for the note. It is unclear whether MECP2 is a DNA binding specific TF so we did not include

Thanks for the notification. Could you share the sequence you used as input so we can reproduce the

Thanks for the notification. This is due to the fact that JASPAR is now hosted by ELIXIR. We

You can use the version you want but we would still recommend to use the latest version of the

Hi Dinithi, Thanks for your interest in JASPAR. The TFBSs used to construct the PFMs from ChIP-seq

Hello, Thanks for your request. We will investigate how to implement this as soon as possible since

Dear Jiawei Mu, Thanks for using JASPAR. Could you please share the exact error you got? Once you are

Dear Dinithi, Thanks for your request. There was indeed an issue with the sites. It is now fixed in

Hello. Thanks a lot! On Friday, November 3, 2023 at 5:20:37 PM UTC+9 Anthony Mathelier wrote: Hello,

Dear Victor, We corrected UniProt annotation for the next release of JASPAR going out soon. On Sunday

I'd recommend to get the PFM from JASPAR and then predict TFBSs in the promoters of your genes of