JASPAR Q&A Forum

I have a FASTA sequence and want to find the corresponding TF, so I added all the Homo sapiens TFs to

Hi. Thanks for your interest in JASPAR. If you have the genomic coordinates of your promoter

Dear Gabriele. Thanks for your inquiry. There is no link between the JASPAR IDs and the associated

Dear Shang. Thanks for your inquiry. We recommend users to use the newest version of each profile as

Dear Maggie. Thanks for reaching out. We do not use pseudocounts in the TF binding profiles stored in

Dear Yochay. Thanks for pointing that out. The issue here comes from the fact that the first version

Hi Kelvin. Unfortunately, it does not look like we have kept this information; the data has been

Dear Gilles. Thanks for your interest in UniBind and your kind words. The TFBSs are indeed of high

Thank you so much Aziz. Very best, Tanay On Sat, Mar 16, 2024 at 6:01 AM azez...@gmail.com <azez.

Hi Rahul, JASPAR is not acronym, it is the database name. You can simply mention JASPAR database and

Dear Stephan, Thanks for your interest in JASPAR and for raising this question. Unfortunately, the

Dear Joaquina, Thanks for raising this issue. The server in Canada that is hosting the data is

Thanks for the note. It is unclear whether MECP2 is a DNA binding specific TF so we did not include

Thanks for the notification. Could you share the sequence you used as input so we can reproduce the

Thanks for the notification. This is due to the fact that JASPAR is now hosted by ELIXIR. We

You can use the version you want but we would still recommend to use the latest version of the

Hi Dinithi, Thanks for your interest in JASPAR. The TFBSs used to construct the PFMs from ChIP-seq

Hello, Thanks for your request. We will investigate how to implement this as soon as possible since

Dear Jiawei Mu, Thanks for using JASPAR. Could you please share the exact error you got? Once you are

Dear Dinithi, Thanks for your request. There was indeed an issue with the sites. It is now fixed in

Hello. Thanks a lot! On Friday, November 3, 2023 at 5:20:37 PM UTC+9 Anthony Mathelier wrote: Hello,

Dear Victor, We corrected UniProt annotation for the next release of JASPAR going out soon. On Sunday

I'd recommend to get the PFM from JASPAR and then predict TFBSs in the promoters of your genes of

I am sorry but I am not sure what you mean here. Maybe you can extract TSSs associated with miRNAs (

Dear Danielle, I'm very sorry for my late reply. Regarding the extension, I recommend testing

When in doubt, you can always use the profile inference tool: https://jaspar.genereg.net/inference I

Dear Aleksandra, Thanks for your interest in JASPAR. The 274 profiles you are referring to were

Dear Laura, Thanks for your enquiry. In the latest JASPAR release, we discarded unused collections

Dear Hanwen, We currently do not provide this functionality. I guess you should add your motifs

Hi Thang, Thanks for your interest in JASPAR. The TF gene names are provided in the metadata, which