JASPAR Q&A Forum

The base ID is associated with a specific motif for a TF. JASPAR provides binding profiles per taxon,

Hi Tim. Thanks for your message, support, and query. That is a very good suggestion indeed. We will

The captcha is expected here since it is associated with a form for users to provide us support for

The Y-axis should be labeled -log10(pvalue). Thanks for raising the issue. On Monday, November 18,

Hi Romain. JASPAR is species agnostic within the same taxon. If you are interesting in mouse TFBSs,

Hi. We do not provide any background but the raw PFMs. You can transform the PFMs into PWMs with the

Dear Cen, In order to include this motif, we need TF-DNA interaction data, such as ChIP-seq or HT-

Dear JASPAR community, since i am totally new in the research of TFs, I would like to find help or

Dear colleagues and JASPAR users, We are conducting a survey to further improve JASPAR by

I noticed there is another tool developed (https://github.com/wassermanlab/JASPAR-UCSC-tracks), I saw

Hi Oriol, Thanks for your information on the relative score! I just wonder how the "score"

Hi Anthony, I used the TFBS extraction tool to get the score and I noticed that the score I got is P-

This is the result i got. Thank you in advance!! El lunes, 18 de noviembre de 2024 a las 20:21:43 UTC

Thanks for the inquiry. As I previously wrote, we are not convinced that MECP2 is a DNA-binding-

In the 9th release of JASPAR, we discarded unused collections introduced in early releases of the

Dear Yoav. You can use the TFBStools R bioconductor package. Best AM On Thursday, September 12, 2024

Dear Triana. You can get such a table using the pyJASPAR python module, the JASPAR2024 Bioconductor

Thanks for raising this issue. We will investigate and keep you posted. On Thursday, October 31, 2024

Thanks for raising this issue. Something is clearly wrong and we will try to fix as soon as possible.

I found that it would work properly when I entered a longer FASTA sequence. Thank you for your help!

Hi. The TF binding profiles are provided at the taxonomic group level; the species information are

Hi, Super, thank you for the link to the publication, I have started to explore it. I will contact

Dear Vedran. Thanks for your interest in JASPAR and your message. The CTCFL motif in JASPAR was

Dear Charlie. Thanks for your interest in JASPAR and for reaching out. You could theoretically run

Dear Gabriele. Thanks for your inquiry. There is no link between the JASPAR IDs and the associated

Dear Shang. Thanks for your inquiry. We recommend users to use the newest version of each profile as

Dear Maggie. Thanks for reaching out. We do not use pseudocounts in the TF binding profiles stored in

Dear Yochay. Thanks for pointing that out. The issue here comes from the fact that the first version

Hi Kelvin. Unfortunately, it does not look like we have kept this information; the data has been

Dear Gilles. Thanks for your interest in UniBind and your kind words. The TFBSs are indeed of high