JASPAR Q&A Forum

Hello. JASPAR provides a single TF binding profile per TF per taxon. As the human and mouse Stat5 are

Thanks for your message. You must select at least one TF binding profile to run the scan on a FASTA

Thanks for raising this. These profiles directly come from CISBP, which got them from FlyFactorSurvey

Thanks for raising this issue. The FASTA file for MA0020 is indeed incorrect and should be removed as

Hi Seongjun, Thanks for bringing this up. This is because the websearch first filters the profiles

Dear Jackhao Lin. Thanks for reaching out. The 2022 release of JASPAR indeed contained a profile for

Hi! Thank you so much for this. I have used the tool and used IGV to view the BED file. However, it

Dear Aziz, Thank you very much for your kind response. I will include the material in my manuscript.

The base ID is associated with a specific motif for a TF. JASPAR provides binding profiles per taxon,

Hi Tim. Thanks for your message, support, and query. That is a very good suggestion indeed. We will

The captcha is expected here since it is associated with a form for users to provide us support for

The Y-axis should be labeled -log10(pvalue). Thanks for raising the issue. On Monday, November 18,

Hi Romain. JASPAR is species agnostic within the same taxon. If you are interesting in mouse TFBSs,

Hi. We do not provide any background but the raw PFMs. You can transform the PFMs into PWMs with the

Dear Cen, In order to include this motif, we need TF-DNA interaction data, such as ChIP-seq or HT-

Dear JASPAR community, since i am totally new in the research of TFs, I would like to find help or

Dear colleagues and JASPAR users, We are conducting a survey to further improve JASPAR by

I noticed there is another tool developed (https://github.com/wassermanlab/JASPAR-UCSC-tracks), I saw

Hi Oriol, Thanks for your information on the relative score! I just wonder how the "score"

Hi Anthony, I used the TFBS extraction tool to get the score and I noticed that the score I got is P-

This is the result i got. Thank you in advance!! El lunes, 18 de noviembre de 2024 a las 20:21:43 UTC

Thanks for the inquiry. As I previously wrote, we are not convinced that MECP2 is a DNA-binding-

In the 9th release of JASPAR, we discarded unused collections introduced in early releases of the

Dear Yoav. You can use the TFBStools R bioconductor package. Best AM On Thursday, September 12, 2024

Dear Triana. You can get such a table using the pyJASPAR python module, the JASPAR2024 Bioconductor

Thanks for raising this issue. We will investigate and keep you posted. On Thursday, October 31, 2024

Thanks for raising this issue. Something is clearly wrong and we will try to fix as soon as possible.

I found that it would work properly when I entered a longer FASTA sequence. Thank you for your help!

Hi. The TF binding profiles are provided at the taxonomic group level; the species information are

Hi, Super, thank you for the link to the publication, I have started to explore it. I will contact