error in installation process

[somayeh bakhshaei]

Hello all,

I am a new user in Jane, Is it possible to tell me why i give this error during installation please?

CPPFLAGS=/Share/HLT-14/bakhshaei/ITRC/jane/jane2/include/SRI LDFLAGS=/Share/HLT-14/bakhshaei/ITRC/jane/jane2/lib/  CXX=gcc-4.5.1  MARCH=opteron scons -j7
scons: Reading SConscript files ...
TypeError: Directory /Share/HLT-14/bakhshaei/ITRC/jane/jane2/include/SRI found where file expected.:
  File "/Share/HLT-14/bakhshaei/ITRC/jane/jane2/SConstruct", line 25:
    env.MergeFlags(os.environ.get("CPPFLAGS", ""))
  File "/usr/lib64/python2.7/site-packages/SCons/Environment.py", line 805:
    args = self.ParseFlags(args)
  File "/usr/lib64/python2.7/site-packages/SCons/Environment.py", line 791:
    do_parse(arg, do_parse)
  File "/usr/lib64/python2.7/site-packages/SCons/Environment.py", line 728:
    dict['LIBS'].append(self.fs.File(arg))
  File "/usr/lib64/python2.7/site-packages/SCons/Node/FS.py", line 1274:
    return self._lookup(name, directory, File, create)
  File "/usr/lib64/python2.7/site-packages/SCons/Node/FS.py", line 1253:
    return root._lookup_abs(p, fsclass, create)
  File "/usr/lib64/python2.7/site-packages/SCons/Node/FS.py", line 2123:
    result.diskcheck_match()
  File "/usr/lib64/python2.7/site-packages/SCons/Node/FS.py", line 2269:
    "Directory %s found where file expected.")
  File "/usr/lib64/python2.7/site-packages/SCons/Node/FS.py", line 410:
    raise TypeError, errorfmt % node.abspath


thank you,

---------------------
Best Regards,
S.Bakhshaei

After All you will come ....
And will spread light on the dark desolate world!
O' Kind Father! We will be waiting for your affectionate hands ...

[David Vilar]

Hi Somayeh,

You are missing the -I and -L in your CPPFLAGS and LDFLAGS respectively.
The correct syntax should be

CPPFLAGS="-I /Share/HLT-14/bakhshaei/ITRC/jane/jane2/include/SRI"
LDFLAGS="-L /Share/HLT-14/bakhshaei/ITRC/jane/jane2/lib/" CXX=gcc-4.5.1
MARCH=opteron scons -j7

Also note that jane automatically looks for the SRI header files in a
SRI subdirectory. I.e. with your call, jane will look into
/Share/HLT-14/bakhshaei/ITRC/jane/jane2/include/SRI/SRI for the files.
If this is not what you want, just delete the last SRI from you CPPFLAGS.

Have fun with jane!

David

--
David Vilar Torres
DFKI GmbH, Alt-Moabit 91c, 10559 Berlin
Tel. (+49) 30 238 95 1845

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(Vorsitzender), Dr. Walter Olthoff
Vorsitzender des Aufsichtsrats: Prof. Dr. h.c. Hans A. Aukes
Amtsgericht Kaiserslautern, HRB 2313

[somayeh bakhshaei]

Hi David,

The above problem was solved when I export these two as variables separately:

CPPFLAGS &  LDFLAGS

but after a lots of warnings I the installation terminated.

Checking for C++ library NumericalRecipes... no
Checking for C++ library cppunit... no
Not building #/bin/x86_64/optimizer.x86_64-standard because library NumericalRecipes is missing.
Not building #/bin/x86_64/unitTests.x86_64-standard because library cppunit is missing.
scons: done reading SConscript files.
scons: Building targets ...
scons: `options.bash' is up to date.
scons: `options.zsh' is up to date.
scons: `queueSettings.bash' is up to date.
scons: `queueSettings.zsh' is up to date.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/Translation/RandLMInterface.hh:4,
                 from src/Translation/LMInterface.cc:5:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLMPreproc.h:25,
                 from src/RandLM/RandLMPreproc.cpp:17:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLMStats.h:22,
                 from src/RandLM/RandLMStats.cpp:18:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLMPreproc.h:25,
                 from src/RandLM/RandLMStruct.cpp:17:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLMStats.h:22,
                 from src/RandLM/RandLMQuantiser.cpp:23:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLMPreproc.h:25,
                 from src/RandLM/LogFreqBloomFilter.h:23,
                 from src/RandLM/LogFreqBloomFilter.cpp:17:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLMPreproc.h:25,
                 from src/RandLM/LogFreqBloomFilter.h:23,
                 from src/RandLM/LogFreqSketch.h:21,
                 from src/RandLM/LogFreqSketch.cpp:17:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLMPreproc.h:25,
                 from src/RandLM/LogFreqBloomFilter.h:23,
                 from src/RandLM/BloomMap.h:21,
                 from src/RandLM/BloomMap.cpp:19:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/BloomierFilter.h:20,
                 from src/RandLM/BloomierFilter.cpp:17:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLM.cpp:19:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLMPreproc.h:25,
                 from src/RandLM/RandLMParams.cpp:19:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLM.h:25,
                 from src/RandLM/RandLMPreproc.h:25,
                 from src/RandLM/RandLMPipeline.h:20,
                 from src/RandLM/RandLMPipeline.cpp:17:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from src/RandLM/RandLMHashCache.h:18,
                 from src/RandLM/RandLMHashCache.cpp:17:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
build/x86_64-standard/Translation/libTranslation.a(SriLMInterface.o): In function `Translation::SriLMInterface::lmLookAheadScore(unsigned int&)':
SriLMInterface.cc:(.text+0x5f): undefined reference to `SArray<unsigned int, float>::find(unsigned int, bool&) const'
build/x86_64-standard/Translation/libTranslation.a(SriLMInterface.o): In function `Translation::SriLMInterface::prepareLMLookAhead(unsigned int*)':
SriLMInterface.cc:(.text+0x11a): undefined reference to `SArray<unsigned int, Trie<unsigned int, BOnode> >::find(unsigned int, bool&) const'
build/x86_64-standard/Translation/libTranslation.a(SriLMInterface.o): In function `LM::pplFloatCountsFile(File&, unsigned int, TextStats&, char const*, bool)':
SriLMInterface.cc:(.text._ZN2LM18pplFloatCountsFileER4FilejR9TextStatsPKcb[LM::pplFloatCountsFile(File&, unsigned int, TextStats&, char const*, bool)]+0x11): undefined reference to `double LM::pplCountsFile<double>(File&, unsigned int, TextStats&, char const*, bool, NgramCounts<double>*)'
build/x86_64-standard/Translation/libTranslation.a(SriLMInterface.o): In function `LM::pplCountsFile(File&, unsigned int, TextStats&, char const*, bool)':
SriLMInterface.cc:(.text._ZN2LM13pplCountsFileER4FilejR9TextStatsPKcb[LM::pplCountsFile(File&, unsigned int, TextStats&, char const*, bool)]+0x11): undefined reference to `unsigned long LM::pplCountsFile<unsigned long>(File&, unsigned int, TextStats&, char const*, bool, NgramCounts<unsigned long>*)'
build/x86_64-standard/Translation/libTranslation.a(SriLMInterface.o):(.rodata._ZTVN11Translation13NgramExtendedE[vtable for Translation::NgramExtended]+0x170): undefined reference to `Ngram::pruneProbs(double, unsigned int, LM*)'
collect2: ld returned 1 exit status
scons: *** [bin/jane.x86_64-standard] Error 1
scons: building terminated because of errors.

On Thu, Feb 2, 2012 at 12:18 PM, somayeh bakhshaei <s.bak...@gmail.com> wrote:

Thank you David,

I change my script as you said but the error changed to:

CPPFLAGS="-I /Share/HLT-14/bakhshaei/ITRC/jane/jane2/include/" LDFLAGS="-L /Share/HLT-14/bakhshaei/ITRC/jane/jane2/lib/" CXX=gcc-4.5.1 scons -j3

scons: Reading SConscript files ...

Checking whether the C++ compiler worksno
Warning: Option -march=native not supported by the compiler, using generic optimizations.
         You may specify the target architecture with the MARCH environment variable.
Checking whether the C++ compiler worksno
Checking for C++ library oolm_c... no
Error: The SRI LM Toolkit must be installed (under a "SRI" include dir)

In the case SRI dir seems to be installed correctly .

--

---------------------
Best Regards,
S.Bakhshaei

After All you will come ....
And will spread light on the dark desolate world!
O' Kind Father! We will be waiting for your affectionate hands ...

[Jörn Wübker]

Hi Somayeh,

have you compiled the srilm toolkit with
make World OPTION=_c ?

Best,
Joern

Am 02.02.12 07:57, schrieb somayeh bakhshaei: