turns out we never implemented the automation for single-machine phrase training.
For a quick fix, please use the two scripts I attached to replace the ones in your Jane bin directory.
I also corrected some formatting errors and naming inconsistencies in your jane.config file and re-attached it.
Finally, please train a 2-gram language model on the target side of your data and update the filename in the jane.config.
This should allow your toy setup to run through.
If you have an SGE at your disposal, you will want to use it for larger data. Otherwise training will be very slow.
If you have further questions, please don't hesitate to ask :-)