How can i use paths config of requires with Jam?

[Evgeny Sorokin]

Hello.

I have a situation when I need to use "paths" config in my application. E.g.:

requirejs.config({

    baseUrl: '',

    paths: {

        modules: 'js/app/modules'

    }

});

So when I define a module: 

define(['backbone', 'modules/user'], function(Backbone, User) {}));

Require JS will load User dependency from url: js/app/modules/user.js

It works fine, but when I am trying to compile my application:

jam compile -i js/app.js dist/public/js/lib/require.js

I got an error:

Error: ENOENT, no such file or directory '/Users/40in/dev/backbone-marionette-boilerplate/public/modules/user.js'

Because the file user.js located in '/Users/40in/dev/backbone-marionette-boilerplate/public/js/app/modules/user.js'

So how can I resolve paths during compile process?

Thank you