Can jaffa detect intragenic rearrangements from RNAseq data?

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Wolfgang Rumpf

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Apr 22, 2019, 4:02:20 PM4/22/19
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I'm trying to detect exon jumbling within a gene (intragenic rather than between genes) from long-read (PacBio) RNAseq data. Will jaffa do this?

Nadia Davidson

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Apr 22, 2019, 7:48:35 PM4/22/19
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Hi Wolfgang,

No unfortunately JAFFA does not do this.

Cheers,
Nadia.
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