input files are fastq files, 'The pattern provided "%_*fastq" did not match any of the files provided as input [ checks]'

[veronic...@gmail.com]

Hi Nadia,

 My files are fastq files with names of A1_1.fastq and A1_2.fastq. I changed the 'fastqInputFormat=%_*.fastq.gz' to 'fastqInputFormat=%_*.fastq' in JAFFA_stages.groovy file.

It showed me the error  in Stage run_check that 'The pattern provided '%_*.fastq' did not match any of the files provided as input [checks]'.

Could you please help me figure it out?

Thanks,

Tianshi

[veronic...@gmail.com]

The problem has been solved. I just forgot to specify the fastq files but not just the folder of those fastq files.