I guess you mean without the GUI interface? It is not currently possible but such option could be added with a few days work. jAER does provide
remote control interface for the AEViewer and for the AEChip on separate UDP ports, but not all menu items have a remote control command implemented.
The closet thing currently is the remote viewer in net.sf.jaer.jaerappletviewer. That was developed to show DVS output from an early prototype network DVS128 that streamed event data over multicast UDP packets.