View DTI RGB images like slicesdir does in FSL

[Yishi Wang]

Dear experts,

Is it possible to use itksnap or some other software to output DTI images in RGB mode like "slicesdir" in FSL does? I'm asking this because I'd like to check the DTI data quality of many subjects using an overview but better be in a color-coded FA rather than grey scale FA.

Thanks!

Yishi

[Paul Yushkevich]

Convert your DTI data into direction-coded RGB images, and save as a 3-component NIFTI or MHA file. Then when you load the image in ITK-SNAP, go to the Layer Inspector (Ctrl-I) go to "General" tab, and select RGB option under "Multi-Component Display"

Paul 

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Paul A. Yushkevich, Ph.D.
Associate Professor
Penn Image Computing and Science Laboratory
Department of Radiology
University of Pennsylvania

[Yishi Wang]

Hi Dr. Yushkevich,

Thank you for your guide. In fact, I'm wondering whether I could get an image overview like this but in color coded mode so I can take a really quick look at all the subjects.

Thanks

Yishi

在 2016年3月26日星期六 UTC+8下午11:35:37，Paul Yushkevich写道：

[Paul Yushkevich]

Hi

No SNAP does not really support the lightbox view like that.

Paul