Launch ITK-snap in command line?

[Vincent Finnerty]

Is there documentation on the command line options to launch ITK-snap 3.4 ?

We would like to be able to specify CT or PET DICOM images (multiple instances in a folder), ROIs (in mhd).

Alternatively we could launch a workspace file.

Thank you.

 

[Paul Yushkevich]

Yes:

pauly$ itksnap -h

ITK-SnAP Command Line Usage:

   /Applications/ITK-SNAP.app/Contents/MacOS/ITK-SNAP [options] [main_image]

Image Options:

   -g FILE              : Load the main image from FILE

   -s FILE              : Load the segmentation image from FILE

   -l FILE              : Load label descriptions from FILE

   -o FILE [FILE+]      : Load additional images from FILE

                        :   (multiple files may be provided)

   -w FILE              : Load workspace from FILE

                        :   (-w cannot be mixed with -g,-s,-l,-o options)

Additional Options:

   -z FACTOR            : Specify initial zoom in screen pixels/mm

   --cwd PATH           : Start with PATH as the initial directory

Debugging/Testing Options:

   --debug-events       : Dump information regarding UI events

   --test list          : List available tests.

   --test TESTID        : Execute a test.

   --testdir DIR        : Set the root directory for tests.

   --testacc factor     : Adjust the interval between test commands by factor (e.g., 0.5).

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Paul A. Yushkevich, Ph.D.
Associate Professor
Penn Image Computing and Science Laboratory
Department of Radiology
University of Pennsylvania