open TIFF stack

[Steffen Jaensch]

Hi,

I would like to open a TIFF stack that represents 3D time-lapse images
meaning that the third dimension of the TIFF file is used for the
spacial Z-dimension as well as the time-dimension. Does anyone know how
to open such a file in itkSnap?

Thanks,
Steffen.

[Paul Yushkevich]

Hi Steffen

You can use "Import->Convert Foreign to Analyze" in MRICro to convert TIFF to an .img file

Paul.

Penn Image Computing and Science Laboratory (PICSL)
Department of Radiology,
University of Pennsylvania

[JUAN CARLOS BELLO MUÑOZ]

Hi Steffen

 

It is not possible to open such files on SNAP, 

You might try to open 3D stackTIFF files in image J.  Once there,  you can go to the plugins menu and save those files as Analyze  (The plug in, of corse, is called "analyze writer").

The Analyze files can be easily opened and manipulated with itkSNAP

 

I hope this would help you

 

Best Regards

 

 

JUAN CARLOS
 

2007/12/3, Steffen Jaensch <jae...@mpi-cbg.de>:

[Steffen Jaensch]

Hi guys,

thanks for your answers. Using ImageJ Analyze Writer works fine. The
TIFF stack converted with MRICro to an .img file could not be opened
because SNAP crashed upon attempting to load the .img file. Anyway, I'm
wondering whether SNAP is able to handle time-dependend data. My image
file consists of 1550 images with each group of 50 images comprising one
Z-scan. Hence, there are 31 time points. So, what I want is to look at
(and segment) the 3D-volume for each time point. Is SNAP the right
program for that or can it only handle static 3D images?

Cheers,
Steffen.