itksnap-users

The best might be also to copy paste what is found in System Information. I am on Win 10 using

Hello, I was hoping to get some help on the models I have created with SimVascular and ITK-SNAP. I

Hello everyone I am a Japanese obstetrician and gynecologist. I am studying fetal heart modeling from

Hi, Paul Thank you reply, I tried the c3d -reslice-identity command to the reslice dimension of

Hi This is actually "correct" behavior. The overlay has to have the same voxel grid as the

It works! Thank you Salvatore El mié, 2 dic 2020 a las 17:32, Dorian Pustina (<albnet@gmail.com

It is entirely possible. Most of the saved workspaces since then have worked, only occasionally does

Same issue, following this trend as well Beatrice Il giorno lunedì 16 novembre 2020 alle 07:04:25 UTC

Hello, I have a MRI scan which gets loaded as a multi-component image. I can load it and view it from

Hi, You can export the label descriptions as a text file from the Segmentation menu. If you share the

Greetings, I am looking for a tool to pad a ROI image to a reference image. Basically to make the two

Greetings, I am currently exploring ITK-SNAPs potential application as a volumetric measurement for

I am sorry Paul, I am a beginner with this software, yes, I just want to obtain a mirror ROI

Hi Martin, Try using c3d_affine_tool on the transforms exported from ITK-SNAP (it's a binary

If you want to rotate a single image, you will need to load it twice, first as the "main image

Hi, Can you please upload a segmentation image as .nii.gz to my box? Sent from my iPhone On Nov 19,

I am not sure it is the case here, but when it comes to overlay issues, which are common for me when

Great, thank you Paul! Rolf On Tuesday, 10 November 2020 at 23:27:39 UTC+1 pyush...@gmail.com wrote:

Hi Anna, Using c3d, you can only split the image into binary images, hole fill each binary image, and

Hi You can apply a mask to your automatic segmentation after the fact using the segmentation

Hi Philip, Thank you very much for your response! I have an error message at the moment when I try to

Good morning everyone, I keep having the same error. Would anyone be able to help me, please? I'

Question: I am using the snake tool to automate the segmentation......but in the step 3 of the

To turn negative values in an image into positives, I currently do c3d img.nii -dup -multiply -sqrt

Hello ITK SNAP developers, We are working with a clinician who is annotating 3D DSA images using ITK-

Hi Jonas, I have tried itk will several similar exams which also only have an axial series. I think

Hi itksnap Users, I have some MRI images that are not oriented in the right way. I tried to reorient

Hi Daniel, Only the raw image file reader allows you to specify endianness, but you need to know the

Hello – I'm having some challenges with the windows version of ITK-SNAP and I'm hoping

Hello ITK-SNAP gurus, I'm still new to ITK-snap, and not sure if this is obvious or not. I'm