Numpy Related Errors

[WEILONG ZHAO]

Dear Isonet team,

Hi, I have encountered some numpy related errors in different jobs,

At first, I got the error message about the numpy version in both refine and predict jobs. I saw the same issue was mentioned here:https://github.com/IsoNet-cryoET/IsoNet/issues/40. 

After I installed the latest version of Isonet, same error message still showed up in refine jobs. In the predict jobs, the numpy error was gone, but the 'Bad file descriptor' error was still there.

I have attached the log for those errors, I am running Isonet with:

- python 3.8.18

- tensorflow-gpu 2.8.0

- numpy 1.24.4

Many thanks,

Weilong

[YUNTAO LIU]

Hi Weilong,

We found that the “bad file descriptor ” does not affect the execution and performance of IsoNet. Let me know whether the results are generated correctly.

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Best Regards,

Yuntao Liu,  Postdoc.

California NanoSystem Institute

University of California Los Angeles

[WEILONG ZHAO]

Dear Yuntao,

Thanks a lot for the reply! Yes, the corrected tomograms were still generated.

Sorry I just realised I forgot to attach the log files.

Many thanks,
Weilong

在2023年12月18日星期一 UTC 18:20:12<yun...@g.ucla.edu> 写道：

Hi Weilong,

We found that the “bad file descriptor ” does not affect the execution and performance of IsoNet. Let me know whether the results are generated correctly.

On Monday, December 18, 2023, WEILONG ZHAO <weilo...@gmail.com> wrote:

Dear Isonet team,

Hi, I have encountered some numpy related errors in different jobs,

At first, I got the error message about the numpy version in both refine and predict jobs. I saw the same issue was mentioned here:https://github.com/IsoNet-cryoET/IsoNet/issues/40. 

After I installed the latest version of Isonet, same error message still showed up in refine jobs. In the predict jobs, the numpy error was gone, but the 'Bad file descriptor' error was still there.

I have attached the log for those errors, I am running Isonet with:

- python 3.8.18

- tensorflow-gpu 2.8.0

- numpy 1.24.4

Many thanks,

Weilong

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