No signial peptides were found

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Serigne Basse

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Jul 10, 2023, 9:23:43 PM7/10/23

to IsoformSwitchAnalyzeR

Hi,

Y have an error with the Part2 my code is:

exampleSwitchList <- isoformSwitchAnalysisPart2(
switchAnalyzeRlist = exampleSwitchList,
n = 10,
removeNoncodinORFs = TRUE,
pathToCPATresultFile = "cpatReslut.txt",
pathToPFAMresultFile = "pfamResult.txt",
pathToSignalPresultFile = "signalResluts.txt",
codingCutoff = 0.725,
outputPlots = TRUE,
pathToOutput = "/plots/",
consequencesToAnalyze = c(
'intron_retention',
'coding_potential',
'ORF_seq_similarity',
'NMD_status',
'domains_identified',
'signal_peptide_identified'
)
)

and y git this error:

Error in analyzeSignalP(switchAnalyzeRlist = switchAnalyzeRlist, pathToSignalPresultFile = pathToSignalPresultFile, :
No signial peptides were found
Calls: isoformSwitchAnalysisPart2 -> analyzeSignalP
Execution halted