isoformSwitchAnalysisPart1 error satuRn

kris r

unread,

Mar 17, 2023, 4:57:06 PM3/17/23

to IsoformSwitchAnalyzeR

Hello,

I'm running through the vignette and encountered an error on the iisoformSwitchAnalysisPart1 function. All seems to check out in the previous step.

I'm running:

IsoformSwitchAnalyzeR_2.01.09 and satuRn_1.2.0.

Error:
exampleSwitchList <- isoformSwitchAnalysisPart1(
+ switchAnalyzeRlist =aSwitchList,

+ outputSequences = FALSE,
+ prepareForWebServers = FALSE
+ )
Step 1 of 3 : Detecting isoform switches...
|++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=01s
Error in satuRn::testDTU(object = sumExp, contrasts = L, diagplot1 = diagplots, :
unused arguments (diagplot1 = diagplots, diagplot2 = diagplots)

Any ideas on how to resolve?

Thanks!

Kristoffer Vitting-Seerup

unread,

Mar 20, 2023, 11:21:57 AM3/20/23

to IsoformSwitchAnalyzeR

You need to use satuRn >= 1.7.0 :-)

You can update from it's github

Kristoffer Vitting-Seerup

unread,

Mar 20, 2023, 11:22:32 AM3/20/23

to IsoformSwitchAnalyzeR

Looks like your previous post...?

fredag den 17. marts 2023 kl. 21.57.06 UTC+1 skrev kris r:

Reply all

Reply to author

Forward