Error in dplyr::left_join(transcriptData, orfData, by = "isoform_id"

[Megan Noonan]

Has anyone been getting this error when doing the functional consequences Pt2? I've updated everything but am still getting this. Any help would be appreciated! 

Megan

Step 1 of 3 : Importing external sequence analysis...
Step 2 of 3 : Analyzing alternative splicing...                                                              
Step 3 of 3 : Predicting functional consequences...
Error in dplyr::left_join(transcriptData, orfData, by = "isoform_id",  :
  `...` must be empty.
✖ Problematic argument:
• all.x = TRUE
Error: with piece 1:
  isoformUpregulated isoformDownregulated comparison
1  ENST00000358849.9    ENST00000477092.5          1

[Kristoffer Vitting-Seerup]

Yes. An update of dplyr causes this problem.

Grap the latest version from GitHub and that will fix your problem. As you can see from the news file a lot have happened so I suggest you restart the entire IsoformSwitchAnalyzeR workflow :-)

Cheers

Kristoffer