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Some details on the box I'm using, as it's different than our demo we were
using last week, this is much closer to what we'll be running in
production, so phase 2 of our demo process. The box is running RHEL 5, I'm
using the embedded Tomcat that comes with Fedora 3.5, and am running this
Tomcat as the fedora user with JVC.
--
HARDY POTTINGER <potti...@umsystem.edu>
University of Missouri Library Systems
http://lso.umsystem.edu/~pottingerhj/
https://MOspace.umsystem.edu/
"No matter how far down the wrong road you've gone,
turn back." --Turkish proverb
><mailto:islandora%2Bunsu...@googlegroups.com>.
>
>For more options, visit this group at
>http://groups.google.com/group/islandora?hl=en.
>
>
>
>
>
>
>
>--
>Nelson Hart
>iPad Developer - Islandora / TourPad Project
>Robertson Library
>University of Prince Edward Island
>nh...@upei.ca
>
>--
>You received this message because you are subscribed to the Google Groups
>"islandora" group.
So, it's trying... Just wish I knew more about this mysterious 500 error.
Scanning below, realized I mistyped JVC when I meant JSVC.
--
HARDY POTTINGER <potti...@umsystem.edu>
University of Missouri Library Systems
http://lso.umsystem.edu/~pottingerhj/
https://MOspace.umsystem.edu/
"Debug only code. Comments lie."
On 4/3/12 11:49 AM, "Jonathan Green" <jona...@discoverygarden.ca> wrote:
>Is there anything interesting showing up in the djatoka log files?
>http://sourceforge.net/apps/mediawiki/djatoka/index.php?title=Logging
>
>By default I believe it will log to the current directory when you
>started tomcat if you haven't set up a path for logging in the djatoka
>log4j configuration file.
>
>On Tue, Apr 3, 2012 at 12:31 PM, Pottinger, Hardy J.
><Potti...@umsystem.edu> wrote:
>
>Hi, thanks for the tip, the start script was not explicitly declaring the
>path for JAVA_HOME, it is now, but there has been no change in the
>behavior I noted before. I can see via PsiProbe that JAVA_HOME is properly
>set to: /usr/lib/jvm/java-1.6.0-sun-1.6.0.29/jre which should be golden.
>I'm still quite confused that there's no trace of this error in the
>catalina.out log file.
>
>Some details on the box I'm using, as it's different than our demo we were
>using last week, this is much closer to what we'll be running in
>production, so phase 2 of our demo process. The box is running RHEL 5, I'm
>using the embedded Tomcat that comes with Fedora 3.5, and am running this
>Tomcat as the fedora user with JVC.
>
>--
>HARDY POTTINGER <potti...@umsystem.edu>
>University of Missouri Library Systems
>http://lso.umsystem.edu/~pottingerhj/
><http://lso.umsystem.edu/%7Epottingerhj/>
>><mailto:islandora%2Bunsu...@googlegroups.com
>><mailto:islandora%252Buns...@googlegroups.com>>.
>Jonathan Green
>DiscoveryGarden Inc.
>Sims Office Suites Building, 3rd Floor, 118 Sydney Street
>
>Charlottetown, PE C1A 1G4
>902.367.3851 discoverygarden.ca <http://discoverygarden.ca/>
>jona...@discoverygarden.ca
>skype: jonathan.edwards.green
2012-04-03/12:45:46.838/CDT [http-8081-1] INFO processingRemoteURI:
http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2
2012-04-03/12:45:56.124/CDT [http-8081-1] DEBUG remoteCacheSize: 1
2012-04-03/12:45:56.126/CDT [http-8081-1] DEBUG
java.lang.UnsatisfiedLinkError: no kdu_jni in java.library.path
2012-04-03/12:46:01.220/CDT [http-8081-1] DEBUG
java.lang.NoClassDefFoundError: Could not initialize class
kdu_jni.Jpx_source
So, clearly the Kakadu dependencies are not getting found.
I'm on the trail now, will post the solution when I find it.
--
HARDY POTTINGER <potti...@umsystem.edu>
University of Missouri Library Systems
http://lso.umsystem.edu/~pottingerhj/
https://MOspace.umsystem.edu/
"Debug only code. Comments lie."
This is what they look like on my machine:
DLD_LIBRARY_PATH=/usr/local/djatoka/lib/Linux-x86-64
KAKADU_LIBRARY_PATH=/usr/local/djatoka/lib/Linux-x86-64
KAKADU_HOME=/usr/local/djatoka/lib/Linux-x86-64
-nruest
DJATOKA_HOME=`pwd`
To:
DJATOKA_HOME=/opt/adore-djatoka-1.1
When I start fedora, here are the JAVA_OPTS that are getting passed:
-Djava.awt.headless=true
-Dkakadu.home=/opt/adore-djatoka-1.1/bin/Linux-x86-32
-Djava.library.path=/opt/adore-djatoka-1.1/lib/Linux-x86-32
-DLD_LIBRARY_PATH=/opt/adore-djatoka-1.1/lib/Linux-x86-32 -Xmx512m
-Djava.awt.headless=true
-Dkakadu.home=/opt/adore-djatoka-1.1/bin/Linux-x86-32
-Djava.library.path=/opt/adore-djatoka-1.1/lib/Linux-x86-32
-DLD_LIBRARY_PATH=/opt/adore-djatoka-1.1/lib/Linux-x86-32 -Xmx1024M
-Xms768M -XX:MaxPermSize=128M -XX:PermSize=32M -XX:+UseParallelGC
-Dfile.encoding=UTF-8 -Dcom.sun.management.jmxremote
Now when I try my test, this is what I see in djatoka.log:
2012-04-03/13:08:19.934/CDT [http-8081-1] INFO processingRemoteURI:
http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2
2012-04-03/13:08:32.952/CDT [http-8081-1] DEBUG remoteCacheSize: 1
2012-04-03/13:08:33.039/CDT [http-8081-1] DEBUG null/kdu_expand -quiet -i
/tmp/cache1354165286829378066425685907.jp2 -o /dev/stdout -reduce 3
-region {0.0,0.0},{0.6476683937823834,0.335401643468053}
2012-04-03/13:08:33.042/CDT [http-8081-1] ERROR java.io.IOException:
Cannot run program "null/kdu_expand" (in directory "null"):
java.io.IOException: error=2, No such file or directory
java.io.IOException: Cannot run program "null/kdu_expand" (in directory
"null"): java.io.IOException: error=2, No such file or directory
at java.lang.ProcessBuilder.start(ProcessBuilder.java:460)
at java.lang.Runtime.exec(Runtime.java:593)
at java.lang.Runtime.exec(Runtime.java:431)
at
gov.lanl.adore.djatoka.kdu.KduExtractExe.process(KduExtractExe.java:229)
at
gov.lanl.adore.djatoka.DjatokaExtractProcessor.extractImage(DjatokaExtractP
rocessor.java:157)
at
gov.lanl.adore.djatoka.DjatokaExtractProcessor.extractImage(DjatokaExtractP
rocessor.java:85)
at
gov.lanl.adore.djatoka.openurl.OpenURLJP2KService.resolve(OpenURLJP2KServic
e.java:255)
at
org.oclc.oomRef.OpenURLRequestProcessorImpl.resolve(OpenURLRequestProcessor
Impl.java:82)
at
gov.lanl.adore.djatoka.openurl.OpenURLServlet.doGet(OpenURLServlet.java:121
)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applicatio
nFilterChain.java:290)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterC
hain.java:206)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.j
ava:233)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.j
ava:191)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:12
7)
at
com.googlecode.psiprobe.Tomcat60AgentValve.invoke(Tomcat60AgentValve.java:3
0)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:10
2)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.jav
a:109)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:857)
at
org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Htt
p11Protocol.java:588)
at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.io.IOException: java.io.IOException: error=2, No such file
or directory
at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
at java.lang.ProcessImpl.start(ProcessImpl.java:65)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
... 23 more
It still looks like a path problem.
--
HARDY POTTINGER <potti...@umsystem.edu>
University of Missouri Library Systems
http://lso.umsystem.edu/~pottingerhj/
https://MOspace.umsystem.edu/
"I think I like disruptive technology because
it makes the whole world a bit fuzzy, my
normal state of mind."
-- Robert Llewellyn (aka Kryten)
2012-04-03/15:11:42.688/CDT [http-8081-1] DEBUG envParams:
LD_LIBRARY_PATH=null | null/kdu_expand
Looking for ideas for things to try next.
--
HARDY POTTINGER <potti...@umsystem.edu>
University of Missouri Library Systems
http://lso.umsystem.edu/~pottingerhj/
https://MOspace.umsystem.edu/
"I am always doing that which I cannot do, in order that I may learn how
to do it." --Pablo Picasso
http://linuxmafia.com/faq/Admin/ld-lib-path.html
And their recommendation is to *never* use this environment variable. The
top reason is probably applicable to my situation:
LD_LIBRARY_PATH is used in preference to any run time or default system
linker path. If (God forbid) you had it set to something like
/dcs/spod/baduser/lib, if there was a hacked version of libc in that
directory (for example) your account could be compromised. It is for this
reason that set-uid programs completely ignore LD_LIBRARY_PATH
I am using JSVC to run tomcat as the fedora user. I think that probably
makes jsvc a set-uid program. Which would seem to indicate that no matter
how I attempt to set LD_LIBRARY_PATH, the variable will be dropped when
jsvc starts up.
Back to the drawing board here.
--
HARDY POTTINGER <potti...@umsystem.edu>
University of Missouri Library Systems
http://lso.umsystem.edu/~pottingerhj/
https://MOspace.umsystem.edu/
"Look for the answer inside your question." --Rumi
--Hardy
Sent from my iPad
On Apr 3, 2012, at 6:07 PM, "Jonathan Green" <jona...@discoverygarden.ca<mailto:jona...@discoverygarden.ca>> wrote:
Did you add the env.sh to your tomcat start up script? If so, you might want to do an echo at the end of the tomcat start up script and make sure LD_LIBRARY_PATH is setup there.
On Tue, Apr 3, 2012 at 5:45 PM, Pottinger, Hardy J. <<mailto:Potti...@umsystem.edu>Potti...@umsystem.edu<mailto:Potti...@umsystem.edu>> wrote:
Yep, this is definitely a problem with the env.sh script in
$KAKADU_HOME/bin. I've modified it as per the instructions on the wiki,
and it does look like LD_LIBRARY_PATH is getting set, however, from
djatoka.log, it's clearly not getting that environment variable:
2012-04-03/15<tel:2012-04-03%2F15>:11:42.688/CDT [http-8081-1] DEBUG envParams:
LD_LIBRARY_PATH=null | null/kdu_expand
Looking for ideas for things to try next.
--
HARDY POTTINGER <<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mailto:potti...@umsystem.edu>>
University of Missouri Library Systems
<http://lso.umsystem.edu/%7Epottingerhj/>http://lso.umsystem.edu/~pottingerhj/
<https://MOspace.umsystem.edu/>https://MOspace.umsystem.edu/
"I am always doing that which I cannot do, in order that I may learn how
to do it." --Pablo Picasso
On 4/3/12 2:07 PM, "Pottinger, Hardy J." <<mailto:Potti...@umsystem.edu>Potti...@umsystem.edu<mailto:Potti...@umsystem.edu>> wrote:
>Hi, Nick. Yes. I had to hack the env.sh script in $KAKADU_HOME/bin
>changing:
>
>DJATOKA_HOME=`pwd`
>
>To:
>
>DJATOKA_HOME=/opt/adore-djatoka-1.1
>
>When I start fedora, here are the JAVA_OPTS that are getting passed:
>
>-Djava.awt.headless=true
>-Dkakadu.home=/opt/adore-djatoka-1.1/bin/Linux-x86-32
>-Djava.library.path=/opt/adore-djatoka-1.1/lib/Linux-x86-32
>-DLD_LIBRARY_PATH=/opt/adore-djatoka-1.1/lib/Linux-x86-32 -Xmx512m
>-Djava.awt.headless=true
>-Dkakadu.home=/opt/adore-djatoka-1.1/bin/Linux-x86-32
>-Djava.library.path=/opt/adore-djatoka-1.1/lib/Linux-x86-32
>-DLD_LIBRARY_PATH=/opt/adore-djatoka-1.1/lib/Linux-x86-32 -Xmx1024M
>-Xms768M -XX:MaxPermSize=128M -XX:PermSize=32M -XX:+UseParallelGC
>-Dfile.encoding=UTF-8 -Dcom.sun.management.jmxremote
>
>
>Now when I try my test, this is what I see in djatoka.log:
>
>2012-04-03/13<tel:2012-04-03%2F13>:08:19.934/CDT [http-8081-1] INFO processingRemoteURI:
><http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2>http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2
>2012-04-03/13<tel:2012-04-03%2F13>:08:32.952/CDT [http-8081-1] DEBUG remoteCacheSize: 1
>2012-04-03/13<tel:2012-04-03%2F13>:08:33.039/CDT [http-8081-1] DEBUG null/kdu_expand -quiet -i
>/tmp/cache1354165286829378066425685907.jp2 -o /dev/stdout -reduce 3
>-region {0.0,0.0},{0.6476683937823834,0.335401643468053}
>2012-04-03/13<tel:2012-04-03%2F13>:08:33.042/CDT [http-8081-1] ERROR java.io.IOException:
>HARDY POTTINGER <<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mailto:potti...@umsystem.edu>>
>University of Missouri Library Systems
><http://lso.umsystem.edu/%7Epottingerhj/>http://lso.umsystem.edu/~pottingerhj/
><https://MOspace.umsystem.edu/>https://MOspace.umsystem.edu/
>"I think I like disruptive technology because
>it makes the whole world a bit fuzzy, my
>normal state of mind."
>-- Robert Llewellyn (aka Kryten)
>
>
>
>
>
>On 4/3/12 1:37 PM, "Nick Ruest" <<mailto:rue...@gmail.com>rue...@gmail.com<mailto:rue...@gmail.com>> wrote:
>
>>Do you have these path variables setup?
>>LD_LIBRARY_PATH or DLD_LIBRARY_PATH
>>KAKADU_LIBRARY_PATH
>>KAKADU_HOME
>>
>>This is what they look like on my machine:
>>DLD_LIBRARY_PATH=/usr/local/djatoka/lib/Linux-x86-64
>>KAKADU_LIBRARY_PATH=/usr/local/djatoka/lib/Linux-x86-64
>>KAKADU_HOME=/usr/local/djatoka/lib/Linux-x86-64
>>
>>-nruest
>>
>>On 12-04-03 02:29 PM, Pottinger, Hardy J. wrote:
>>> Aha, progress, I now have an error message and a clue to follow up on.
>>>I
>>> turned on DEBUG logging in
>>> $CATALINA_HOME/webapps/adore-djatoka/WEB-INF/classes/log4j.properties,
>>>and
>>> now I can see the following in djatoka.log:
>>>
>>> 2012-04-03/12<tel:2012-04-03%2F12>:45:46.838/CDT [http-8081-1] INFO processingRemoteURI:
>>> <http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2> http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2
>>> 2012-04-03/12<tel:2012-04-03%2F12>:45:56.124/CDT [http-8081-1] DEBUG remoteCacheSize: 1
>>> 2012-04-03/12<tel:2012-04-03%2F12>:45:56.126/CDT [http-8081-1] DEBUG
>>> java.lang.UnsatisfiedLinkError: no kdu_jni in java.library.path
>>> 2012-04-03/12<tel:2012-04-03%2F12>:46:01.220/CDT [http-8081-1] DEBUG
>>> java.lang.NoClassDefFoundError: Could not initialize class
>>> kdu_jni.Jpx_source
>>>
>>> So, clearly the Kakadu dependencies are not getting found.
>>>
>>> I'm on the trail now, will post the solution when I find it.
>>>
>>>
>>> --
>>> HARDY POTTINGER<<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mailto:potti...@umsystem.edu>>
>>> University of Missouri Library Systems
>>> <http://lso.umsystem.edu/%7Epottingerhj/> http://lso.umsystem.edu/~pottingerhj/
>>> <https://MOspace.umsystem.edu/> https://MOspace.umsystem.edu/
>>> "Debug only code. Comments lie."
>>>
>>>
>>>
>>>
>>>
>>> On 4/3/12 12:01 PM, "Pottinger, Hardy J."<<mailto:Potti...@umsystem.edu>Potti...@umsystem.edu<mailto:Potti...@umsystem.edu>>
>>>wrote:
>>>
>>>> $ cat djatoka.log
>>>> 2012-04-03/10<tel:2012-04-03%2F10>:14:00.964/CDT [http-8081-3] INFO processingRemoteURI:
>>>> <http://memory.loc.gov/gmd/gmd433/g4330/g4330/np000066.jp2> http://memory.loc.gov/gmd/gmd433/g4330/g4330/np000066.jp2
>>>> 2012-04-03/10<tel:2012-04-03%2F10>:15:08.514/CDT [http-8081-3] INFO processingRemoteURI:
>>>> <http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2> http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2
>>>>
>>>> So, it's trying... Just wish I knew more about this mysterious 500
>>>>error.
>>>>
>>>> Scanning below, realized I mistyped JVC when I meant JSVC.
>>>>
>>>>
>>>> --
>>>> HARDY POTTINGER<<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mailto:potti...@umsystem.edu>>
>>>> University of Missouri Library Systems
>>>> <http://lso.umsystem.edu/%7Epottingerhj/> http://lso.umsystem.edu/~pottingerhj/
>>>> <https://MOspace.umsystem.edu/> https://MOspace.umsystem.edu/
>>>> "Debug only code. Comments lie."
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On 4/3/12 11:49 AM, "Jonathan Green"<<mailto:jona...@discoverygarden.ca>jona...@discoverygarden.ca<mailto:jona...@discoverygarden.ca>>
>>>>wrote:
>>>>
>>>>> Is there anything interesting showing up in the djatoka log files?
>>>>> <http://sourceforge.net/apps/mediawiki/djatoka/index.php?title=Logging> http://sourceforge.net/apps/mediawiki/djatoka/index.php?title=Logging
>>>>> HARDY POTTINGER<<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mailto:potti...@umsystem.edu>>
>>>>> University of Missouri Library Systems
>>>>> <http://lso.umsystem.edu/%7Epottingerhj/> http://lso.umsystem.edu/~pottingerhj/
>>>>> <<http://lso.umsystem.edu/%7Epottingerhj/>http://lso.umsystem.edu/%7Epottingerhj/>
>>>>> <https://MOspace.umsystem.edu/> https://MOspace.umsystem.edu/
>>>>> "No matter how far down the wrong road you've gone,
>>>>> turn back." --Turkish proverb
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On 4/2/12 5:35 PM, "Nelson Hart"<<mailto:nh...@upei.ca>nh...@upei.ca<mailto:nh...@upei.ca>> wrote:
>>>>>
>>>>>> Hi Hardy,
>>>>>> I'm ran into this same problem last week. Check your version of Java
>>>>>> installed. I believe Djatoka requires Sun JKD/JRE and not the Open
>>>>>> JDK/JRE. I've been meaning to ask someone around the office but
>>>>>>haven't
>>>>>> gotten to it yet. I still haven't got my setup working.
>>>>>>
>>>>>> Cheers,
>>>>>> Nelson
>>>>>>
>>>>>> On Mon, Apr 2, 2012 at 7:22 PM, Hardy Pottinger
>>>>>> <<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mailto:potti...@umsystem.edu>> wrote:
>>>>>>
>>>>>> Hi, I'm following these instructions:
>>>>>>
>>>>>><https://wiki.duraspace.org/display/ISLANDORA/Chapter+12+-+Installing+>https://wiki.duraspace.org/display/ISLANDORA/Chapter+12+-+Installing+
>>>>>>S
>>>>>>ol
>>>>>> u
>>>>>> t
>>>>>> ion+Pack+Dependencies
>>>>>>
>>>>>>
>>>>>> and am attempting to install Djatoka. Whenever I go to
>>>>>> <http://[fedora-server]:8081/adore-djatoka> http://[fedora-server]:8081/adore-djatoka
>>>>>>
>>>>>> The LC test image does not load. I'm trying an alternate test image,
>>>>>> just
>>>>>> to be sure, but every time I try to "Open image in new window" I get
>>>>>> "HTTP Status 500", which is fine, but no error shows up in
>>>>>> $FEDORA_HOME/tomcat/logs/catalina.out
>>>>>>
>>>>>> I'm a bit confused. I've never seen Tomcat throw an error and not
>>>>>>put
>>>>>> anything in the log file about it, so I'm at a loss for where to go
>>>>>>from
>>>>>> here, and figured I'd better ask the list, on the off chance I'm
>>>>>>just
>>>>>> missing something.
>>>>>>
>>>>>> --
>>>>>> You received this message because you are subscribed to the Google
>>>>>> Groups
>>>>>> "islandora" group.
>>>>>> To view this discussion on the web visit
>>>>>> <https://groups.google.com/d/msg/islandora/-/NCbu9A3D9gsJ> https://groups.google.com/d/msg/islandora/-/NCbu9A3D9gsJ.
>>>>>>
>>>>>> To post to this group, send email to <mailto:isla...@googlegroups.com> isla...@googlegroups.com<mailto:isla...@googlegroups.com>.
>>>>>> To unsubscribe from this group, send email to
>>>>>> <mailto:islandora%2Bunsu...@googlegroups.com> islandora+...@googlegroups.com<mailto:islandora+...@googlegroups.com>
>>>>>> <mailto:islandora%2Bunsu...@googlegroups.com<mailto:islandora%252Buns...@googlegroups.com>>
>>>>>
>>>>>> <mailto:islandora%2Bunsu...@googlegroups.com<mailto:islandora%252Buns...@googlegroups.com>
>>>>>> <mailto:islandora%252Buns...@googlegroups.com<mailto:islandora%25252Bun...@googlegroups.com>>>.
>>>>>>
>>>>>> For more options, visit this group at
>>>>>> <http://groups.google.com/group/islandora?hl=en> http://groups.google.com/group/islandora?hl=en.
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Nelson Hart
>>>>>> iPad Developer - Islandora / TourPad Project
>>>>>> Robertson Library
>>>>>> University of Prince Edward Island
>>>>>> <mailto:nh...@upei.ca> nh...@upei.ca<mailto:nh...@upei.ca>
>>>>>>
>>>>>> --
>>>>>> You received this message because you are subscribed to the Google
>>>>>> Groups
>>>>>> "islandora" group.
>>>>>> To post to this group, send email to <mailto:isla...@googlegroups.com> isla...@googlegroups.com<mailto:isla...@googlegroups.com>.
>>>>>> To unsubscribe from this group, send email to
>>>>>> <mailto:islandora%2Bunsu...@googlegroups.com> islandora+...@googlegroups.com<mailto:islandora+...@googlegroups.com>
>>>>>> <mailto:islandora%2Bunsu...@googlegroups.com<mailto:islandora%252Buns...@googlegroups.com>>.
>>>>>>
>>>>>> For more options, visit this group at
>>>>>> <http://groups.google.com/group/islandora?hl=en> http://groups.google.com/group/islandora?hl=en.
>>>>> --
>>>>> You received this message because you are subscribed to the Google
>>>>>Groups
>>>>> "islandora" group.
>>>>> To post to this group, send email to <mailto:isla...@googlegroups.com> isla...@googlegroups.com<mailto:isla...@googlegroups.com>.
>>>>> To unsubscribe from this group, send email to
>>>>> <mailto:islandora%2Bunsu...@googlegroups.com> islandora+...@googlegroups.com<mailto:islandora+...@googlegroups.com>
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>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Jonathan Green
>>>>> DiscoveryGarden Inc.
>>>>> Sims Office Suites Building, 3rd Floor, 118 Sydney Street
>>>>>
>>>>> Charlottetown, PE C1A 1G4
>>>>> 902.367.3851<tel:902.367.3851> <http://discoverygarden.ca> discoverygarden.ca<http://discoverygarden.ca><<http://discoverygarden.ca/>http://discoverygarden.ca/>
>>>>> <mailto:jona...@discoverygarden.ca> jona...@discoverygarden.ca<mailto:jona...@discoverygarden.ca>
>>>>> skype: jonathan.edwards.green
>>>>>
>>>>>
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Jonathan Green
DiscoveryGarden Inc.
Sims Office Suites Building, 3rd Floor, 118 Sydney Street
Charlottetown, PE C1A 1G4
902.367.3851 <http://discoverygarden.ca/> discoverygarden.ca<http://discoverygarden.ca>
<mailto:jona...@discoverygarden.ca>jona...@discoverygarden.ca<mailto:jona...@discoverygarden.ca>
skype: jonathan.edwards.green
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WARNING: lots and lots of debug output below, sorry for the wall of text.
Here's the debug output from djatoka.log when I attempt to use the Djatoka
OpenURL Demo:
2012-04-05/13:56:32.562/CDT [http-8081-1] DEBUG envParams:
LD_LIBRARY_PATH=null | null/kdu_expand
2012-04-05/13:56:32.568/CDT [http-8081-1] INFO processingRemoteURI:
http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2
2012-04-05/13:56:45.932/CDT [http-8081-1] DEBUG remoteCacheSize: 1
2012-04-05/13:56:45.943/CDT [http-8081-1] DEBUG null/kdu_expand -quiet -i
/tmp/cache1354165284219469834668641784.jp2 -o /dev/stdout -reduce 3
-region {0.0,0.0},{0.6476683937823834,0.335401643468053}
2012-04-05/13:56:45.946/CDT [http-8081-1] ERROR java.io.IOException:
Cannot run program "null/kdu_expand" (in directory "null"):
java.io.IOException: error=2, No such file or directory
java.io.IOException: Cannot run program "null/kdu_expand" (in directory
"null"): java.io.IOException: error=2, No such file or directory
at java.lang.ProcessBuilder.start(ProcessBuilder.java:460)
at java.lang.Runtime.exec(Runtime.java:593)
at java.lang.Runtime.exec(Runtime.java:431)
at
gov.lanl.adore.djatoka.kdu.KduExtractExe.process(KduExtractExe.java:229)
at
gov.lanl.adore.djatoka.DjatokaExtractProcessor.extractImage(DjatokaExtractP
rocessor.java:157)
at
gov.lanl.adore.djatoka.DjatokaExtractProcessor.extractImage(DjatokaExtractP
rocessor.java:85)
at
gov.lanl.adore.djatoka.openurl.OpenURLJP2KService.resolve(OpenURLJP2KServic
e.java:255)
at
org.oclc.oomRef.OpenURLRequestProcessorImpl.resolve(OpenURLRequestProcessor
Impl.java:82)
at
gov.lanl.adore.djatoka.openurl.OpenURLServlet.doGet(OpenURLServlet.java:121
)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applicatio
nFilterChain.java:290)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterC
hain.java:206)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.j
ava:233)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.j
ava:191)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:12
7)
at
com.googlecode.psiprobe.Tomcat60AgentValve.invoke(Tomcat60AgentValve.java:3
0)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:10
2)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.jav
a:109)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298)
at
org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:857)
at
org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Htt
p11Protocol.java:588)
at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.io.IOException: java.io.IOException: error=2, No such file
or directory
at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
at java.lang.ProcessImpl.start(ProcessImpl.java:65)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
... 23 more
2012-04-05/13:56:45.947/CDT [http-8081-1] DEBUG cacheSize: 1
2012-04-05/13:56:45.947/CDT [http-8081-1] DEBUG makingTile:
/var/djatokacache/cache1834139402-5425033306250233200.jpg 0 params:
{"reduce": "3", "level": "3", "region": "0,0,500,500", "rotate": "0",
"scalingFactor": "1.0", "scalingDims": "", "compLayer": "0" }
The pertinent part is:
2012-04-05/13:56:45.946/CDT [http-8081-1] ERROR java.io.IOException:
Cannot run program "null/kdu_expand" (in directory "null"):
java.io.IOException: error=2, No such file or directory
java.io.IOException: Cannot run program "null/kdu_expand" (in directory
"null"):
However, from the debug output from JSVC startup, I can confirm the
LD_LIBRARY_PATH environment variable is getting passed:
sudo service fedora restart
-Xmx512m -Djava.awt.headless=true
-Dkakadu.home=/opt/adore-djatoka-1.1/bin/Linux-x86-32
-Djava.library.path=/opt/adore-djatoka-1.1/lib/Linux-x86-32
-DLD_LIBRARY_PATH=/opt/adore-djatoka-1.1/lib/Linux-x86-32 -Xmx1024M
-Xms768M -XX:MaxPermSize=128M -XX:PermSize=32M -XX:+UseParallelGC
-Dfile.encoding=UTF-8 -Dcom.sun.management.jmxremote
Stopping Fedora's Tomcat with PID 20498...
Stopping jsvc.exec: [ OK ]
05/04/2012 13:53:23 21200 jsvc debug: +-- DUMPING PARSED COMMAND LINE
ARGUMENTS --------------
05/04/2012 13:53:23 21200 jsvc debug: | Detach: True
05/04/2012 13:53:23 21200 jsvc debug: | Show Version: No
05/04/2012 13:53:23 21200 jsvc debug: | Show Help: No
05/04/2012 13:53:23 21200 jsvc debug: | Check Only: Disabled
05/04/2012 13:53:23 21200 jsvc debug: | Stop: False
05/04/2012 13:53:23 21200 jsvc debug: | Wait: 0
05/04/2012 13:53:23 21200 jsvc debug: | Run as service: No
05/04/2012 13:53:23 21200 jsvc debug: | Install service: No
05/04/2012 13:53:23 21200 jsvc debug: | Remove service: No
05/04/2012 13:53:23 21200 jsvc debug: | JVM Name: "null"
05/04/2012 13:53:23 21200 jsvc debug: | Java Home:
"/etc/alternatives/java_sdk_sun"
05/04/2012 13:53:23 21200 jsvc debug: | PID File:
"/home/fedora/fedora/tomcat/temp/fedora-tomcat-jsvc.pid"
05/04/2012 13:53:23 21200 jsvc debug: | User Name: "fedora"
05/04/2012 13:53:23 21200 jsvc debug: | Extra Options: 4
05/04/2012 13:53:23 21200 jsvc debug: |
"-Dcatalina.home=/home/fedora/fedora/tomcat"
05/04/2012 13:53:23 21200 jsvc debug: |
"-Dcatalina.base=/home/fedora/fedora/tomcat"
05/04/2012 13:53:23 21200 jsvc debug: |
"-Djava.library.path=/opt/adore-djatoka-1.1/lib/Linux-x86-32"
05/04/2012 13:53:23 21200 jsvc debug: |
"-Djava.class.path=/etc/alternatives/java_sdk_sun/lib/tools.jar:/home/fedor
a/fedora/tomcat/bin/commons-daemon.jar:/home/fedora/fedora/tomcat/bin/boots
trap.jar"
05/04/2012 13:53:23 21200 jsvc debug: | Class Invoked:
"org.apache.catalina.startup.Bootstrap"
05/04/2012 13:53:23 21200 jsvc debug: | Class Arguments: 0
05/04/2012 13:53:23 21200 jsvc debug:
+-------------------------------------------------------
05/04/2012 13:53:23 21201 jsvc debug: user changed to 'fedora'
05/04/2012 13:53:23 21200 jsvc debug: User 'fedora' validated
05/04/2012 13:53:23 21200 jsvc debug: Attempting to locate Java Home in
/etc/alternatives/java_sdk_sun
05/04/2012 13:53:23 21200 jsvc debug: Attempting to locate VM
configuration file /etc/alternatives/java_sdk_sun/jre/lib/jvm.cfg
05/04/2012 13:53:23 21200 jsvc debug: Attempting to locate VM
configuration file /etc/alternatives/java_sdk_sun/lib/jvm.cfg
05/04/2012 13:53:23 21200 jsvc debug: Attempting to locate VM
configuration file /etc/alternatives/java_sdk_sun/jre/lib/i386/jvm.cfg
05/04/2012 13:53:23 21200 jsvc debug: Found VM configuration file at
/etc/alternatives/java_sdk_sun/jre/lib/i386/jvm.cfg
05/04/2012 13:53:23 21200 jsvc debug: Found VM client definition in
configuration
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/client/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Found VM server definition in
configuration
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/server/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Found VM hotspot definition in
configuration
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/hotspot/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/lib/i386/hotspot/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Cannot locate library for VM hotspot
(skipping)
05/04/2012 13:53:23 21200 jsvc debug: Found VM classic definition in
configuration
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/classic/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/lib/i386/classic/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Cannot locate library for VM classic
(skipping)
05/04/2012 13:53:23 21200 jsvc debug: Found VM native definition in
configuration
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/native/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/lib/i386/native/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Cannot locate library for VM native
(skipping)
05/04/2012 13:53:23 21200 jsvc debug: Found VM green definition in
configuration
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/green/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Checking library
/etc/alternatives/java_sdk_sun/lib/i386/green/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Cannot locate library for VM green
(skipping)
05/04/2012 13:53:23 21200 jsvc debug: Java Home located in
/etc/alternatives/java_sdk_sun
05/04/2012 13:53:23 21200 jsvc debug: +-- DUMPING JAVA HOME STRUCTURE
------------------------
05/04/2012 13:53:23 21200 jsvc debug: | Java Home:
"/etc/alternatives/java_sdk_sun"
05/04/2012 13:53:23 21200 jsvc debug: | Java VM Config.:
"/etc/alternatives/java_sdk_sun/jre/lib/i386/jvm.cfg"
05/04/2012 13:53:23 21200 jsvc debug: | Found JVMs: 2
05/04/2012 13:53:23 21200 jsvc debug: | JVM Name: "client"
05/04/2012 13:53:23 21200 jsvc debug: |
"/etc/alternatives/java_sdk_sun/jre/lib/i386/client/libjvm.so"
05/04/2012 13:53:23 21200 jsvc debug: | JVM Name: "server"
05/04/2012 13:53:23 21200 jsvc debug: |
"/etc/alternatives/java_sdk_sun/jre/lib/i386/server/libjvm.so"
05/04/2012 13:53:23 21200 jsvc debug:
+-------------------------------------------------------
05/04/2012 13:53:23 21200 jsvc debug: Using default JVM in
/etc/alternatives/java_sdk_sun/jre/lib/i386/client/libjvm.so
05/04/2012 13:53:23 21200 jsvc debug: Invoking w/
LD_LIBRARY_PATH=/opt/adore-djatoka-1.1/lib/Linux-x86-32:/etc/alternatives/j
ava_sdk_sun/jre/lib/i386/client:/etc/alternatives/java_sdk_sun/jre/lib/i386
05/04/2012 13:53:23 21200 jsvc.exec debug: +-- DUMPING PARSED COMMAND LINE
ARGUMENTS --------------
05/04/2012 13:53:23 21200 jsvc.exec debug: | Detach: True
05/04/2012 13:53:23 21200 jsvc.exec debug: | Show Version: No
05/04/2012 13:53:23 21200 jsvc.exec debug: | Show Help: No
05/04/2012 13:53:23 21200 jsvc.exec debug: | Check Only: Disabled
05/04/2012 13:53:23 21200 jsvc.exec debug: | Stop: False
05/04/2012 13:53:23 21200 jsvc.exec debug: | Wait: 0
05/04/2012 13:53:23 21200 jsvc.exec debug: | Run as service: No
05/04/2012 13:53:23 21200 jsvc.exec debug: | Install service: No
05/04/2012 13:53:23 21200 jsvc.exec debug: | Remove service: No
05/04/2012 13:53:23 21200 jsvc.exec debug: | JVM Name: "null"
05/04/2012 13:53:23 21200 jsvc.exec debug: | Java Home:
"/etc/alternatives/java_sdk_sun"
05/04/2012 13:53:23 21200 jsvc.exec debug: | PID File:
"/home/fedora/fedora/tomcat/temp/fedora-tomcat-jsvc.pid"
05/04/2012 13:53:23 21200 jsvc.exec debug: | User Name: "fedora"
05/04/2012 13:53:23 21200 jsvc.exec debug: | Extra Options: 4
05/04/2012 13:53:23 21200 jsvc.exec debug: |
"-Dcatalina.home=/home/fedora/fedora/tomcat"
05/04/2012 13:53:23 21200 jsvc.exec debug: |
"-Dcatalina.base=/home/fedora/fedora/tomcat"
05/04/2012 13:53:23 21200 jsvc.exec debug: |
"-Djava.library.path=/opt/adore-djatoka-1.1/lib/Linux-x86-32"
05/04/2012 13:53:23 21200 jsvc.exec debug: |
"-Djava.class.path=/etc/alternatives/java_sdk_sun/lib/tools.jar:/home/fedor
a/fedora/tomcat/bin/commons-daemon.jar:/home/fedora/fedora/tomcat/bin/boots
trap.jar"
05/04/2012 13:53:23 21200 jsvc.exec debug: | Class Invoked:
"org.apache.catalina.startup.Bootstrap"
05/04/2012 13:53:23 21200 jsvc.exec debug: | Class Arguments: 0
05/04/2012 13:53:23 21200 jsvc.exec debug:
+-------------------------------------------------------
05/04/2012 13:53:23 21202 jsvc.exec debug: user changed to 'fedora'
05/04/2012 13:53:23 21200 jsvc.exec debug: User 'fedora' validated
05/04/2012 13:53:23 21200 jsvc.exec debug: Attempting to locate Java Home
in /etc/alternatives/java_sdk_sun
05/04/2012 13:53:23 21200 jsvc.exec debug: Attempting to locate VM
configuration file /etc/alternatives/java_sdk_sun/jre/lib/jvm.cfg
05/04/2012 13:53:23 21200 jsvc.exec debug: Attempting to locate VM
configuration file /etc/alternatives/java_sdk_sun/lib/jvm.cfg
05/04/2012 13:53:23 21200 jsvc.exec debug: Attempting to locate VM
configuration file /etc/alternatives/java_sdk_sun/jre/lib/i386/jvm.cfg
05/04/2012 13:53:23 21200 jsvc.exec debug: Found VM configuration file at
/etc/alternatives/java_sdk_sun/jre/lib/i386/jvm.cfg
05/04/2012 13:53:23 21200 jsvc.exec debug: Found VM client definition in
configuration
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/client/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Found VM server definition in
configuration
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/server/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Found VM hotspot definition in
configuration
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/hotspot/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/lib/i386/hotspot/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Cannot locate library for VM
hotspot (skipping)
05/04/2012 13:53:23 21200 jsvc.exec debug: Found VM classic definition in
configuration
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/classic/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/lib/i386/classic/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Cannot locate library for VM
classic (skipping)
05/04/2012 13:53:23 21200 jsvc.exec debug: Found VM native definition in
configuration
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/native/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/lib/i386/native/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Cannot locate library for VM
native (skipping)
05/04/2012 13:53:23 21200 jsvc.exec debug: Found VM green definition in
configuration
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/jre/lib/i386/green/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Checking library
/etc/alternatives/java_sdk_sun/lib/i386/green/libjvm.so
05/04/2012 13:53:23 21200 jsvc.exec debug: Cannot locate library for VM
green (skipping)
05/04/2012 13:53:23 21200 jsvc.exec debug: Java Home located in
/etc/alternatives/java_sdk_sun
05/04/2012 13:53:23 21200 jsvc.exec debug: +-- DUMPING JAVA HOME STRUCTURE
------------------------
05/04/2012 13:53:23 21200 jsvc.exec debug: | Java Home:
"/etc/alternatives/java_sdk_sun"
05/04/2012 13:53:23 21200 jsvc.exec debug: | Java VM Config.:
"/etc/alternatives/java_sdk_sun/jre/lib/i386/jvm.cfg"
05/04/2012 13:53:23 21200 jsvc.exec debug: | Found JVMs: 2
05/04/2012 13:53:23 21200 jsvc.exec debug: | JVM Name: "client"
05/04/2012 13:53:23 21200 jsvc.exec debug: |
"/etc/alternatives/java_sdk_sun/jre/lib/i386/client/libjvm.so"
05/04/2012 13:53:23 21200 jsvc.exec debug: | JVM Name: "server"
05/04/2012 13:53:23 21200 jsvc.exec debug: |
"/etc/alternatives/java_sdk_sun/jre/lib/i386/server/libjvm.so"
05/04/2012 13:53:23 21200 jsvc.exec debug:
+-------------------------------------------------------
05/04/2012 13:53:23 21200 jsvc.exec debug: Running w/
LD_LIBRARY_PATH=/opt/adore-djatoka-1.1/lib/Linux-x86-32:/etc/alternatives/j
ava_sdk_sun/jre/lib/i386/client:/etc/alternatives/java_sdk_sun/jre/lib/i386
05/04/2012 13:53:23 21203 jsvc.exec debug: redirecting stdout to
/home/fedora/fedora/tomcat/logs/catalina.out and stderr to &1
Starting jsvc.exec [ OK ]
Fedora's Tomcat running with PID 21204
At this point all I can do is scratch my head, and proceed with deploying
an instance of Fedora that does not make use of the JSVC wrapper.
If anyone has wrestled with these issues, and won, I'd love to hear about
it. Thanks!
--
HARDY POTTINGER <potti...@umsystem.edu>
University of Missouri Library Systems
http://lso.umsystem.edu/~pottingerhj/
https://MOspace.umsystem.edu/
"I am always doing that which I cannot do, in order that I may learn how
to do it." --Pablo Picasso
On 4/3/12 9:17 PM, "Jonathan Green" <jona...@discoverygarden.ca> wrote:
>Sorry. It takes me awhile for me to process my email queue, and I missed
>your second message. The reason Djatoka wants the LD_LIBRARY_PATH to be
>set it its calling some JNI libraries which reference djatokas native
>shared object libraries. Some possible work arounds:
>
>1. Set java.library.path system property (this may or may not work
>depending how the JNI dependencies)
>2. Put symlinks to the shared object files from djatoka into a folder
>that is on the default library path, usually the /usr/lib or /lib folders
>
>
>On Tue, Apr 3, 2012 at 11:00 PM, Pottinger, Hardy J.
><Potti...@umsystem.edu> wrote:
>
>Hi, I have sourced the env.sh script in my start script, however, as
>previously indicated, I am using the jsvc tomcat wrapper to handle
>running tomcat as the fedora user. It looks like jsvc drops
>LD_LIBRARY_PATH as a security measure (see previous message in this
>thread for details). I am going to rework my start script to not use jsvc
>and see where that gets me. I think I would prefer to figure out why
>Djatoka is using LD_LIBRARY_PATH, but first I want to be sure everything
>is working with just the normal tomcat start script.
>
>--Hardy
>
>Sent from my iPad
>
>On Apr 3, 2012, at 6:07 PM, "Jonathan Green"
><jona...@discoverygarden.ca<mailto:jona...@discoverygarden.ca>> wrote:
>
>Did you add the env.sh to your tomcat start up script? If so, you might
>want to do an echo at the end of the tomcat start up script and make sure
>LD_LIBRARY_PATH is setup there.
>
>
>On Tue, Apr 3, 2012 at 5:45 PM, Pottinger, Hardy J.
><<mailto:Potti...@umsystem.edu>Potti...@umsystem.edu<mailto:Pottinge
>r...@umsystem.edu>> wrote:
>
>Yep, this is definitely a problem with the env.sh script in
>$KAKADU_HOME/bin. I've modified it as per the instructions on the wiki,
>and it does look like LD_LIBRARY_PATH is getting set, however, from
>djatoka.log, it's clearly not getting that environment variable:
>
>
>2012-04-03/15 <tel:2012-04-03%2F15><tel:2012-04-03%2F15>:11:42.688/CDT
>[http-8081-1] DEBUG envParams:
>LD_LIBRARY_PATH=null | null/kdu_expand
>
>Looking for ideas for things to try next.
>
>--
>
>HARDY POTTINGER
><<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mailto:pottinge
>r...@umsystem.edu>>
>University of Missouri Library Systems
>
><http://lso.umsystem.edu/%7Epottingerhj/>http://lso.umsystem.edu/~pottinge
>rhj/ <http://lso.umsystem.edu/%7Epottingerhj/>
>
><https://MOspace.umsystem.edu/>https://MOspace.umsystem.edu/
>"I am always doing that which I cannot do, in order that I may learn how
>to do it." --Pablo Picasso
>
>
>
>
>
>
>On 4/3/12 2:07 PM, "Pottinger, Hardy J."
><<mailto:Potti...@umsystem.edu>Potti...@umsystem.edu<mailto:Pottinge
>r...@umsystem.edu>> wrote:
>
>>Hi, Nick. Yes. I had to hack the env.sh script in $KAKADU_HOME/bin
>>changing:
>>
>>DJATOKA_HOME=`pwd`
>>
>>To:
>>
>>DJATOKA_HOME=/opt/adore-djatoka-1.1
>>
>>When I start fedora, here are the JAVA_OPTS that are getting passed:
>>
>>-Djava.awt.headless=true
>>-Dkakadu.home=/opt/adore-djatoka-1.1/bin/Linux-x86-32
>>-Djava.library.path=/opt/adore-djatoka-1.1/lib/Linux-x86-32
>>-DLD_LIBRARY_PATH=/opt/adore-djatoka-1.1/lib/Linux-x86-32 -Xmx512m
>>-Djava.awt.headless=true
>>-Dkakadu.home=/opt/adore-djatoka-1.1/bin/Linux-x86-32
>>-Djava.library.path=/opt/adore-djatoka-1.1/lib/Linux-x86-32
>>-DLD_LIBRARY_PATH=/opt/adore-djatoka-1.1/lib/Linux-x86-32 -Xmx1024M
>>-Xms768M -XX:MaxPermSize=128M -XX:PermSize=32M -XX:+UseParallelGC
>>-Dfile.encoding=UTF-8 -Dcom.sun.management.jmxremote
>>
>>
>>Now when I try my test, this is what I see in djatoka.log:
>>
>
>>2012-04-03/13 <tel:2012-04-03%2F13><tel:2012-04-03%2F13>:08:19.934/CDT
>>[http-8081-1] INFO processingRemoteURI:
>><http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2>http://memory.lo
>>c.gov/gmd/gmd3/g3200/g3200/ct000425.jp2
>
>>2012-04-03/13 <tel:2012-04-03%2F13><tel:2012-04-03%2F13>:08:32.952/CDT
>>[http-8081-1] DEBUG remoteCacheSize: 1
>>2012-04-03/13 <tel:2012-04-03%2F13><tel:2012-04-03%2F13>:08:33.039/CDT
>>[http-8081-1] DEBUG null/kdu_expand -quiet -i
>>/tmp/cache1354165286829378066425685907.jp2 -o /dev/stdout -reduce 3
>>-region {0.0,0.0},{0.6476683937823834,0.335401643468053}
>
>>2012-04-03/13 <tel:2012-04-03%2F13><tel:2012-04-03%2F13>:08:33.042/CDT
>>[http-8081-1] ERROR java.io.IOException:
>>Cannot run program "null/kdu_expand" (in directory "null"):
>>java.io.IOException: error=2, No such file or directory
>>java.io.IOException: Cannot run program "null/kdu_expand" (in directory
>>"null"): java.io.IOException: error=2, No such file or directory
>> at java.lang.ProcessBuilder.start(ProcessBuilder.java:460)
>> at java.lang.Runtime.exec(Runtime.java:593)
>> at java.lang.Runtime.exec(Runtime.java:431)
>> at
>>gov.lanl.adore.djatoka.kdu.KduExtractExe.process(KduExtractExe.java:229)
>> at
>>gov.lanl.adore.djatoka.DjatokaExtractProcessor.extractImage(DjatokaExtrac
>>t
>>P
>>rocessor.java:157)
>> at
>>gov.lanl.adore.djatoka.DjatokaExtractProcessor.extractImage(DjatokaExtrac
>>t
>>P
>>rocessor.java:85)
>> at
>>gov.lanl.adore.djatoka.openurl.OpenURLJP2KService.resolve(OpenURLJP2KServ
>>i
>>c
>>e.java:255)
>> at
>>org.oclc.oomRef.OpenURLRequestProcessorImpl.resolve(OpenURLRequestProcess
>>o
>>r
>>Impl.java:82)
>> at
>>gov.lanl.adore.djatoka.openurl.OpenURLServlet.doGet(OpenURLServlet.java:1
>>2
>>1
>>)
>> at javax.servlet.http.HttpServlet.service(HttpServlet.java:617)
>> at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
>> at
>>org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Applicat
>>i
>>o
>>nFilterChain.java:290)
>> at
>>org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilte
>>r
>>C
>>hain.java:206)
>> at
>>org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve
>>.
>>j
>>ava:233)
>> at
>>org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve
>>.
>>j
>>ava:191)
>> at
>>org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:
>>1
>>2
>>7)
>> at
>>com.googlecode.psiprobe.Tomcat60AgentValve.invoke(Tomcat60AgentValve.java
>>:
>>3
>>0)
>> at
>>org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:
>>1
>>0
>>2)
>> at
>>org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.j
>>a
>>v
>>a:109)
>> at
>>org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:29
>>8
>>)
>> at
>>org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:857
>>)
>> at
>>org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(H
>>t
>>t
>>p11Protocol.java:588)
>> at
>>org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
>> at java.lang.Thread.run(Thread.java:662)
>>Caused by: java.io.IOException: java.io.IOException: error=2, No such
>>file
>>or directory
>> at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
>> at java.lang.ProcessImpl.start(ProcessImpl.java:65)
>> at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
>> ... 23 more
>>
>>
>>It still looks like a path problem.
>>
>>
>>--
>>
>
>
>>HARDY POTTINGER
>><<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mailto:potting
>>er...@umsystem.edu>>
>>University of Missouri Library Systems
>
>><http://lso.umsystem.edu/%7Epottingerhj/>http://lso.umsystem.edu/~potting
>>erhj/ <http://lso.umsystem.edu/%7Epottingerhj/>
>
>><https://MOspace.umsystem.edu/>https://MOspace.umsystem.edu/
>>"I think I like disruptive technology because
>>it makes the whole world a bit fuzzy, my
>>normal state of mind."
>>-- Robert Llewellyn (aka Kryten)
>>
>>
>>
>>
>>
>
>>On 4/3/12 1:37 PM, "Nick Ruest"
>><<mailto:rue...@gmail.com>rue...@gmail.com<mailto:rue...@gmail.com>>
>>wrote:
>
>>
>>>Do you have these path variables setup?
>>>LD_LIBRARY_PATH or DLD_LIBRARY_PATH
>>>KAKADU_LIBRARY_PATH
>>>KAKADU_HOME
>>>
>>>This is what they look like on my machine:
>>>DLD_LIBRARY_PATH=/usr/local/djatoka/lib/Linux-x86-64
>>>KAKADU_LIBRARY_PATH=/usr/local/djatoka/lib/Linux-x86-64
>>>KAKADU_HOME=/usr/local/djatoka/lib/Linux-x86-64
>>>
>>>-nruest
>>>
>>>On 12-04-03 02:29 PM, Pottinger, Hardy J. wrote:
>>>> Aha, progress, I now have an error message and a clue to follow up on.
>>>>I
>>>> turned on DEBUG logging in
>>>> $CATALINA_HOME/webapps/adore-djatoka/WEB-INF/classes/log4j.properties,
>>>>and
>>>> now I can see the following in djatoka.log:
>>>>
>
>>>> 2012-04-03/12
>>>><tel:2012-04-03%2F12><tel:2012-04-03%2F12>:45:46.838/CDT [http-8081-1]
>>>>INFO processingRemoteURI:
>>>> <http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2>
>>>>http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2
>
>>>> 2012-04-03/12
>>>><tel:2012-04-03%2F12><tel:2012-04-03%2F12>:45:56.124/CDT [http-8081-1]
>>>>DEBUG remoteCacheSize: 1
>>>> 2012-04-03/12
>>>><tel:2012-04-03%2F12><tel:2012-04-03%2F12>:45:56.126/CDT [http-8081-1]
>>>>DEBUG
>>>> java.lang.UnsatisfiedLinkError: no kdu_jni in java.library.path
>
>>>> 2012-04-03/12
>>>><tel:2012-04-03%2F12><tel:2012-04-03%2F12>:46:01.220/CDT [http-8081-1]
>>>>DEBUG
>>>> java.lang.NoClassDefFoundError: Could not initialize class
>>>> kdu_jni.Jpx_source
>>>>
>>>> So, clearly the Kakadu dependencies are not getting found.
>>>>
>>>> I'm on the trail now, will post the solution when I find it.
>>>>
>>>>
>>>> --
>
>>>> HARDY
>>>>POTTINGER<<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mai
>>>>lto:potti...@umsystem.edu>>
>>>> University of Missouri Library Systems
>
>>>> <http://lso.umsystem.edu/%7Epottingerhj/>
>>>>http://lso.umsystem.edu/~pottingerhj/
>>>><http://lso.umsystem.edu/%7Epottingerhj/>
>
>>>> <https://MOspace.umsystem.edu/> https://MOspace.umsystem.edu/
>>>> "Debug only code. Comments lie."
>>>>
>>>>
>>>>
>>>>
>>>>
>
>>>> On 4/3/12 12:01 PM, "Pottinger, Hardy
>>>>J."<<mailto:Potti...@umsystem.edu>Potti...@umsystem.edu<mailto:Po
>>>>ttin...@umsystem.edu>>
>
>>>>wrote:
>>>>
>>>>> $ cat djatoka.log
>>>>> 2012-04-03/10
>>>>><tel:2012-04-03%2F10><tel:2012-04-03%2F10>:14:00.964/CDT
>>>>>[http-8081-3] INFO processingRemoteURI:
>>>>> <http://memory.loc.gov/gmd/gmd433/g4330/g4330/np000066.jp2>
>>>>>http://memory.loc.gov/gmd/gmd433/g4330/g4330/np000066.jp2
>
>>>>> 2012-04-03/10
>>>>><tel:2012-04-03%2F10><tel:2012-04-03%2F10>:15:08.514/CDT
>>>>>[http-8081-3] INFO processingRemoteURI:
>>>>> <http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2>
>>>>>http://memory.loc.gov/gmd/gmd3/g3200/g3200/ct000425.jp2
>>>>>
>>>>> So, it's trying... Just wish I knew more about this mysterious 500
>>>>>error.
>>>>>
>>>>> Scanning below, realized I mistyped JVC when I meant JSVC.
>>>>>
>>>>>
>>>>> --
>
>>>>> HARDY
>>>>>POTTINGER<<mailto:potti...@umsystem.edu>potti...@umsystem.edu<ma
>>>>>ilto:potti...@umsystem.edu>>
>>>>> University of Missouri Library Systems
>
>>>>> <http://lso.umsystem.edu/%7Epottingerhj/>
>>>>>http://lso.umsystem.edu/~pottingerhj/
>>>>><http://lso.umsystem.edu/%7Epottingerhj/>
>
>>>>> <https://MOspace.umsystem.edu/> https://MOspace.umsystem.edu/
>>>>> "Debug only code. Comments lie."
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>
>>>>> On 4/3/12 11:49 AM, "Jonathan
>>>>>Green"<<mailto:jona...@discoverygarden.ca>jona...@discoverygarden.ca
>>>>><mailto:jona...@discoverygarden.ca>>
>>>>>wrote:
>>>>>
>>>>>> Is there anything interesting showing up in the djatoka log files?
>
>>>>>>
>>>>>><http://sourceforge.net/apps/mediawiki/djatoka/index.php?title=Loggin
>>>>>>g>
>>>>>>http://sourceforge.net/apps/mediawiki/djatoka/index.php?title=Logging
>>>>>>
>>>>>> By default I believe it will log to the current directory when you
>>>>>> started tomcat if you haven't set up a path for logging in the
>>>>>>djatoka
>>>>>> log4j configuration file.
>>>>>>
>>>>>> On Tue, Apr 3, 2012 at 12:31 PM, Pottinger, Hardy J.
>
>>>>>>
>>>>>><<mailto:Potti...@umsystem.edu>Potti...@umsystem.edu<mailto:Pot
>>>>>><<http://lso.umsystem.edu/%7Epottingerhj/>http://lso.umsystem.edu/%7E
>>>>>>pottingerhj/>
>
>>>>>> <https://MOspace.umsystem.edu/> https://MOspace.umsystem.edu/
>>>>>> "No matter how far down the wrong road you've gone,
>>>>>> turn back." --Turkish proverb
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>
>>>>>> On 4/2/12 5:35 PM, "Nelson
>>>>>>Hart"<<mailto:nh...@upei.ca>nh...@upei.ca<mailto:nh...@upei.ca>>
>>>>>>wrote:
>
>>>>>>
>>>>>>> Hi Hardy,
>>>>>>> I'm ran into this same problem last week. Check your version of
>>>>>>>Java
>>>>>>> installed. I believe Djatoka requires Sun JKD/JRE and not the Open
>>>>>>> JDK/JRE. I've been meaning to ask someone around the office but
>>>>>>>haven't
>>>>>>> gotten to it yet. I still haven't got my setup working.
>>>>>>>
>>>>>>> Cheers,
>>>>>>> Nelson
>>>>>>>
>>>>>>> On Mon, Apr 2, 2012 at 7:22 PM, Hardy Pottinger
>
>>>>>>>
>>>>>>><<mailto:potti...@umsystem.edu>potti...@umsystem.edu<mailto:po
>>>>>>><mailto:islandora%252Buns...@googlegroups.com>>
>>>>>>>islandora+...@googlegroups.com
>>>>>>><mailto:islandora%2Bunsu...@googlegroups.com><mailto:islandora+u
>>>>>>>nsubs...@googlegroups.com
>>>>>>><mailto:islandora%2Bunsu...@googlegroups.com>>
>
>>>>>>> <mailto:islandora%2Bunsu...@googlegroups.com
>>>>>>><mailto:islandora%252Buns...@googlegroups.com><mailto:islandora
>>>>>>>%252Buns...@googlegroups.com
>>>>>>><mailto:islandora%25252Bun...@googlegroups.com>>>
>
>>>>>>
>>>>>>> <mailto:islandora%2Bunsu...@googlegroups.com
>>>>>>><mailto:islandora%252Buns...@googlegroups.com><mailto:islandora
>>>>>>>%252Buns...@googlegroups.com
>>>>>>><mailto:islandora%25252Bun...@googlegroups.com>>
>
>>>>>>> <mailto:islandora%252Buns...@googlegroups.com
>>>>>>><mailto:islandora%25252Bun...@googlegroups.com><mailto:islando
>>>>>>>ra%25252Bun...@googlegroups.com
>>>>>>><mailto:islandora%2525252Bu...@googlegroups.com>>>>.
>>>>>>>
>>>>>>> For more options, visit this group at
>
>>>>>>> <http://groups.google.com/group/islandora?hl=en>
>>>>>>>http://groups.google.com/group/islandora?hl=en.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Nelson Hart
>>>>>>> iPad Developer - Islandora / TourPad Project
>>>>>>> Robertson Library
>>>>>>> University of Prince Edward Island
>
>>>>>>> <mailto:nh...@upei.ca> nh...@upei.ca<mailto:nh...@upei.ca>
>>>>>>>
>>>>>>> --
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>
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>>>>>>><mailto:islandora%252Buns...@googlegroups.com><mailto:islandora
>>>>>>>%252Buns...@googlegroups.com
>>>>>>><mailto:islandora%25252Bun...@googlegroups.com>>>.
>
>>>>>>>
>>>>>>> For more options, visit this group at
>
>>>>>>> <http://groups.google.com/group/islandora?hl=en>
>>>>>>>http://groups.google.com/group/islandora?hl=en.
>>>>>> --
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>>>>>><mailto:islandora%252Buns...@googlegroups.com>>
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>>>>>><mailto:islandora%2Bunsu...@googlegroups.com><mailto:islandora+un
>>>>>>subs...@googlegroups.com
>>>>>><mailto:islandora%2Bunsu...@googlegroups.com>>
>>>>>> <mailto:islandora%2Bunsu...@googlegroups.com
>>>>>><mailto:islandora%252Buns...@googlegroups.com><mailto:islandora%
>>>>>>252Buns...@googlegroups.com
>>>>>><mailto:islandora%25252Bun...@googlegroups.com>>>.
>
>>>>>> For more options, visit this group at
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>>>>>>http://groups.google.com/group/islandora?hl=en.
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Jonathan Green
>>>>>> DiscoveryGarden Inc.
>>>>>> Sims Office Suites Building, 3rd Floor, 118 Sydney Street
>>>>>>
>>>>>> Charlottetown, PE C1A 1G4
>
>>>>>> 902.367.3851 <tel:902.367.3851><tel:902.367.3851
>>>>>><tel:902.367.3851>> <http://discoverygarden.ca> discoverygarden.ca
>>>>>><http://discoverygarden.ca><http://discoverygarden.ca><<http://discov
>>>>>>erygarden.ca/>http://discoverygarden.ca/>
>
>>>>>> <mailto:jona...@discoverygarden.ca>
>>>>>>jona...@discoverygarden.ca<mailto:jona...@discoverygarden.ca>
>>>>>> skype: jonathan.edwards.green
>>>>>>
>>>>>>
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>Jonathan Green
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