Hey Christian,
well its not such a nice solution and I even dont know what your application should do exactly but you cn try the following...
Create classes of standard elements which can be added by the user... so the user is able to create their own models out of basic shapes you define... so they can create stuff and you can load them dynamical...
Sorry Im not so deep into POD right now... I just start studding the opengles 2.0 and can only give you right now that advice thats why I also use right now that engine for 3d stuff... its really great I love it a lot even if its not continued right now... once I get more into opengles 2.0 I will try to bring out some extensions...
The other possibility would be to write your own file format but Im not so deep into this...
Hope it helped you a little
regards
Georg