Found the Fix,
You need to have your content inside a div inside the iScroll enabled
div.
E.G
<div id="scroll">
<div id="content">
<!-- Content you want to scroll here -->
</div>
</div>
<script type="text/javascript">
scroll = new iScroll('scroll', {desktopCompatibility:true});
</script>
Then it should work but there is a problem with resizing the content
div and the scroller not resizing with it.