BII-data-manager installation instructions

[Mutlu Dogruel]

Hi,

Following the BII-data-manager installation instructions... My question is about this bit:

==============


navigate the ./BII-data-manager-1.3/config folder and locate the 'data_locations.xml' file.Edit the file as follows:


Set filesystem_path parameter

JDBCPATH=/Users/johnsmith/jdbc_drivers/mysql-connector-java.jar


Set web_url parameter

web_rul=file:///tmp/bii_test_repo/microarray/study_${study-acc}/raw_data

==============

1) There is a bug reported by Glenn on this, but basically, shouldn't the filesystem_path parameter be a local path?

2) There are many filesystem_path parameters in data_locations.xml. Which particular one does the documentation refer to?

3) Typo in "web_rul" above.

4) Also, not very important but perhaps the given example path should be changed to BII-data-mgr-1.5/config instead of BII-data-manager-1.3/config to reflect the latest version ;)


Thanks,

Best regards

Mutlu

[ball...@gmail.com]

I have the same questions.  Was this answered?  I am installing locally on Windows.
Thanks,
David

[eamo...@gmail.com]

Hi David,

It was answered but I can't see the reply. Web url should indeed be the url pointed to by the web application. Path would be the file system path where the files are copied to by the manager.

There's also a blog post on the isatools webpage going through this - http://isatools.wordpress.com/2013/08/23/configuring-links-to-data-files-in-the-bii-web-app-in-jboss-5-x/

Let us know if you need anything further!

Eamonn

---

From: ball...@gmail.com
Sent: ‎14/‎11/‎2014 01:43
To: isaf...@googlegroups.com
Subject: [ISAforum] Re: BII-data-manager installation instructions

--
--
--
 
You received this message because you are subscribed to the Google
Groups "ISAforum" group.
To post to this group, send email to isaf...@googlegroups.com
To unsubscribe from this group, send email to
isaforum+u...@googlegroups.com
For more options, visit this group at
http://groups.google.com/group/isaforum?hl=en-GB
 
Visit the ISAtools website at http://isa-tools.org

---
You received this message because you are subscribed to the Google Groups "ISAforum" group.
To unsubscribe from this group and stop receiving emails from it, send an email to isaforum+u...@googlegroups.com.
For more options, visit https://groups.google.com/d/optout.