IQ-TREE - Google Groups

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We've now moved to https://github.com/iqtree/iqtree2/discussions. Please ask your question there. This Google group is now closed and for archival purpose only.

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Kuselah Tayaban, … Minh Bui7

6/9/20

data input error

Hi Minh, I forgot to check file permission. It already worked! Thanks a lot, Kuselah On Tuesday, June

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data input error

Hi Minh, I forgot to check file permission. It already worked! Thanks a lot, Kuselah On Tuesday, June

6/9/20

Jing Zhang, Minh Bui2

7/15/20

iqtree-mpi warnings for Memory required per CPU-core and run cannot finish

Can you please paste the first 10 lines and the last 10 lines of the log file. Also, paste the line

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iqtree-mpi warnings for Memory required per CPU-core and run cannot finish

Can you please paste the first 10 lines and the last 10 lines of the log file. Also, paste the line

7/15/20

Will Hamilton, Minh Bui6

7/14/20

Quantify support for branch nodes in tree reconstruction

Oh, This is because you didn't perform bootstrap, that's something I missed from your first

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Quantify support for branch nodes in tree reconstruction

Oh, This is because you didn't perform bootstrap, that's something I missed from your first

7/14/20

Sarah Lock, Minh Bui2

4/27/20

IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT? - version 1.6.6

Hi Sarah, There is something wrong in the PLL library used internally in IQ-TREE to compute a

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IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT? - version 1.6.6

Hi Sarah, There is something wrong in the PLL library used internally in IQ-TREE to compute a

4/27/20

Mese, Minh Bui3

5/3/19

IQtree 1.7.b9, MF+MERGE with -p creates best_scheme.nex file with __NA__

Hi Marianne, There is now a new option --out-alignment in the latest beta11 version: https://github.

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IQtree 1.7.b9, MF+MERGE with -p creates best_scheme.nex file with __NA__

Hi Marianne, There is now a new option --out-alignment in the latest beta11 version: https://github.

5/3/19

Shenya, Bui Quang Minh2

4/23/19

Is it possible to use IQTREE to compare different gene tree topologies using AU/SH test ?

Hi, You will need to download and use the command line binary. Please have a look at: http://www.

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Is it possible to use IQTREE to compare different gene tree topologies using AU/SH test ?

Hi, You will need to download and use the command line binary. Please have a look at: http://www.

4/23/19

Andrew Swafford, … Minh Bui7

11/11/19

How to bootstrap branch lengths on fixed topology?

I see it now. Then you can put the label directly on to your original tree file, making sure that the

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How to bootstrap branch lengths on fixed topology?

I see it now. Then you can put the label directly on to your original tree file, making sure that the

11/11/19

Dieunel Derilus, … Brian Foley8

12/18/18

bootstrap supports are 100% in all nodes for long phylogenomic alignments

Thank you for this detailed explanation. Yu are right, the micro algae and Phoptosynthetique

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bootstrap supports are 100% in all nodes for long phylogenomic alignments

Thank you for this detailed explanation. Yu are right, the micro algae and Phoptosynthetique

12/18/18

James, Minh Bui3

7/2/18

Why does iqtree not like / in sequence names?

Hi James, The character replacement will still occur with v1.6.6. The deep reason is because

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Why does iqtree not like / in sequence names?

Hi James, The character replacement will still occur with v1.6.6. The deep reason is because

7/2/18

Chirag Parsania, Minh Bui4

6/30/18

generate pair wise distance matrix of unrooted phylogenetic tree given by "iqtree"

Hi Minh, Thanks a lot for your reply. It was indeed very useful and important information that .

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pairwisedistance

generate pair wise distance matrix of unrooted phylogenetic tree given by "iqtree"

Hi Minh, Thanks a lot for your reply. It was indeed very useful and important information that .

6/30/18

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