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IQ-TREE
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iqtree2/discussions
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Flávia Pezzini
,
Heiko Schmidt
3
6/17/20
Q&A
ERROR: Tree taxa and alignment sequence do not match - LSD2
Hi Heiko, Thank you! All working fine now. With all best wishes, Flávia On Wed, 17 Jun 2020 at 18:34,
unread,
IQtreeErrors
LSD2
error
Q&A
ERROR: Tree taxa and alignment sequence do not match - LSD2
Hi Heiko, Thank you! All working fine now. With all best wishes, Flávia On Wed, 17 Jun 2020 at 18:34,
6/17/20
Gabriel DUPRE
, …
Minh Bui
8
7/3/20
Q&A
"IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT", ASR anlysis with codon model
Hi Gabriel, I suggest that you avoid doing codon models for tree reconstruction for your dataset:
unread,
ASR
IQtreeErrors
codon
error
Q&A
"IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT", ASR anlysis with codon model
Hi Gabriel, I suggest that you avoid doing codon models for tree reconstruction for your dataset:
7/3/20
Kuselah Tayaban
, …
Minh Bui
7
6/9/20
Q&A
data input error
Hi Minh, I forgot to check file permission. It already worked! Thanks a lot, Kuselah On Tuesday, June
unread,
IQtreeErrors
Question
error
iqtree
Q&A
data input error
Hi Minh, I forgot to check file permission. It already worked! Thanks a lot, Kuselah On Tuesday, June
6/9/20
Mukta Joshi
6/5/20
Q&A
Error while choosing right partitioning scheme
ERROR: partitionmodelplen.cpp:146: virtual double PartitionModelPlen::optimizeParameters(int, bool,
unread,
BUG
error
likelihood
Q&A
Error while choosing right partitioning scheme
ERROR: partitionmodelplen.cpp:146: virtual double PartitionModelPlen::optimizeParameters(int, bool,
6/5/20
Volodymyr Dvornyk
,
Rob Lanfear
2
5/27/20
Q&A
ModelFinder help
Hi Volodymyr, The codes simply specify how the six possible parameters should be grouped together.
unread,
code
definition
error
modeel
modeltest
Q&A
ModelFinder help
Hi Volodymyr, The codes simply specify how the six possible parameters should be grouped together.
5/27/20
Emma Carroll
,
Minh Bui
2
5/10/20
Q&A
Bug: error when adding date file
Hi Emma, It seems like something wrong with your dates. Can you please check the format again, eg
unread,
BUG
IQtreeErrors
error
tree_tag
Q&A
Bug: error when adding date file
Hi Emma, It seems like something wrong with your dates. Can you please check the format again, eg
5/10/20
Gabriel DUPRE
,
Minh Bui
3
5/27/20
Q&A
Question about an error message with a tree topology test, -au command and bp-RELL
Hi Minh, Thank you very much for your answer. Cheers Gabriel Le jeudi 7 mai 2020 02:36:09 UTC+2, Minh
unread,
AU_test
BUG
Info
error
topology
tree
Q&A
Question about an error message with a tree topology test, -au command and bp-RELL
Hi Minh, Thank you very much for your answer. Cheers Gabriel Le jeudi 7 mai 2020 02:36:09 UTC+2, Minh
5/27/20
Sarah Lock
,
Minh Bui
2
4/27/20
Q&A
IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT? - version 1.6.6
Hi Sarah, There is something wrong in the PLL library used internally in IQ-TREE to compute a
unread,
BUG
IQtreeErrors
Partition
Question
Request
error
iqtree
Q&A
IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT? - version 1.6.6
Hi Sarah, There is something wrong in the PLL library used internally in IQ-TREE to compute a
4/27/20
David Diaz Escandon
2
3/4/20
BUG: Mixed models IQtree 2.0-rc1
She actually post a question https://groups.google.com/d/topic/iqtree/LYhF3oxafto/discussion, but so
unread,
BUG
IQtreeErrors
Partition
error
BUG: Mixed models IQtree 2.0-rc1
She actually post a question https://groups.google.com/d/topic/iqtree/LYhF3oxafto/discussion, but so
3/4/20
Jacopo Martelossi
,
Minh Bui
2
11/25/19
Q&A
IQ-TREE CRASHES WITH SIGNAL ABORTED while computing likelihood mappin
Hi Jacopo, Someone else also reported this (perhaps same) issue with the likelihood mapping. I could
unread,
IQtreeErrors
crash
error
quartetmapping
Q&A
IQ-TREE CRASHES WITH SIGNAL ABORTED while computing likelihood mappin
Hi Jacopo, Someone else also reported this (perhaps same) issue with the likelihood mapping. I could
11/25/19
edmu...@gmail.com
, …
Conrad van den Ende
3
4/18/19
Q&A
BUG - constraint tree ERROR
Hi Minh, Thanks yes it was a problem with the nexus file. Some characters were ambiguous (one species
unread,
Answered
BUG
error
topology
Q&A
BUG - constraint tree ERROR
Hi Minh, Thanks yes it was a problem with the nexus file. Some characters were ambiguous (one species
4/18/19
Mohak Sharda
,
Minh Bui
2
7/19/18
Q&A
Error while model testing before generating the tree for a multiple sequence alignment of a gene
Hi Mohak, Thanks for reporting this. Can you send me the log file and the alignment via personal
unread,
MODEL
Noresponse
error
Q&A
Error while model testing before generating the tree for a multiple sequence alignment of a gene
Hi Mohak, Thanks for reporting this. Can you send me the log file and the alignment via personal
7/19/18
des...@amnh.org
,
Heiko Schmidt
3
7/13/18
Q&A
ERROR: Too large site ID
thank you heiko actually all i needed to do was change the nex file to #nexus begin sets; charset
unread,
Answered
error
morphological
site
Q&A
ERROR: Too large site ID
thank you heiko actually all i needed to do was change the nex file to #nexus begin sets; charset
7/13/18
Stephen Baca
,
Minh Bui
4
2/13/18
Q&A
Mix Data Error in v. 1.6
Hi Stephen, No need to apologise, this is indeed an issue that we need to fix. Cheers Minh On 13 Feb
unread,
Mixed_data
Resolved
error
Q&A
Mix Data Error in v. 1.6
Hi Stephen, No need to apologise, this is indeed an issue that we need to fix. Cheers Minh On 13 Feb
2/13/18
Connor French
,
Bui Quang Minh
5
1/31/18
Q&A
AU test: A taxon has no name
Hello Minh, Thank you very much for working through this with me! No problems after the correction.
unread,
AU_test
Resolved
error
topology
Q&A
AU test: A taxon has no name
Hello Minh, Thank you very much for working through this with me! No problems after the correction.
1/31/18
Filipe Romero
,
Bui Quang Minh
5
10/9/17
Q&A
Error - IQtree 1.6 beta - segmentation fault evaluating set of user trees.
Dear Filipe, Am I right that this problem is still related to (or the same as) the one you sent not
unread,
AU_test
Resolved
error
polytomy
user_trees
Q&A
Error - IQtree 1.6 beta - segmentation fault evaluating set of user trees.
Dear Filipe, Am I right that this problem is still related to (or the same as) the one you sent not
10/9/17