Groups
Groups
Sign in
Groups
Groups
IQ-TREE
Conversations
Labels
-fconst
-p
-sup
ANT
ASR
AU_test
Announcement
Ans
Answered
BEST
BUG
Bootstrap
ELW
IQtreeErrors
Info
InvalidModel
LSD2
MERGE
MODEL
Mixed_data
ModelFinder
Noresponse
PLL
PMSF
Partition
PoMo
Possibly-resolved
Question
Redundant
Release
Request
Resolved
Resolved-v156
SELECT
SNP
THE
TO
TODO
Unrelated
WITH
acids
added-in-v156
amino
automatic
branch
calculation
check-v16
checkpoint
code
codon
comparison
consensus
crash
datatype
definition
detection
distance
distribution
documentation
error
exclude
feature-request
freerate
gCF
gamma
genome
heterotachy
homebrew_issue
iqtree
irreversible
likelihood
lost-terminal
low-priority
meta-partitions
missing
mldist
modeel
modeltest
morphological
morphology
mpi
network
node
option
pairwisedistance
parallel
performance
phylogenomics
polymorhism
polytomy
position
quartetmapping
rate
relative
rooted
selection
site
site-likelihood
slurm
speed
test
timing
too-add-to-manual
topology
total-evicence
tree
tree_tag
user_trees
v156
v160
v168
v16beta5
value
About
Send feedback
Help
Group path
IQ-TREE
1–11 of 1568
We've now moved to
https://github.com/iqtree/
iqtree2/discussions
. Please ask your question there. This Google group is now closed and for archival purpose only.
Mark all as read
Report group
0 selected
lah...@gmail.com
,
Minh Bui
3
6/3/19
Q&A
ERROR: Tree has different number of taxa!
Hi Zach, This is because the GENESITE resampling caused three bootstrap trees to have fewer taxa:
unread,
TODO
Q&A
ERROR: Tree has different number of taxa!
Hi Zach, This is because the GENESITE resampling caused three bootstrap trees to have fewer taxa:
6/3/19
Mese
,
Minh Bui
3
5/3/19
Q&A
IQtree 1.7.b9, MF+MERGE with -p creates best_scheme.nex file with __NA__
Hi Marianne, There is now a new option --out-alignment in the latest beta11 version: https://github.
unread,
-p
MERGE
ModelFinder
Partition
TODO
iqtree
Q&A
IQtree 1.7.b9, MF+MERGE with -p creates best_scheme.nex file with __NA__
Hi Marianne, There is now a new option --out-alignment in the latest beta11 version: https://github.
5/3/19
Junxia Zhang
,
Minh Bui
3
7/5/18
Q&A
error in IQtree
Hi Junxia, I just downloaded the files. Thanks for the report. Will have a look and get back later.
unread,
TODO
Q&A
error in IQtree
Hi Junxia, I just downloaded the files. Thanks for the report. Will have a look and get back later.
7/5/18
nguyen...@gmail.com
,
Minh Bui
2
7/2/18
Q&A
IQTREE hang after computer was herbinated
Hi Giap, Which operation system are you using? There's a freezing problem just fixed in v1.6.6:
unread,
TODO
Q&A
IQTREE hang after computer was herbinated
Hi Giap, Which operation system are you using? There's a freezing problem just fixed in v1.6.6:
7/2/18
Cacau Centurion
,
Minh Bui
2
4/29/18
Q&A
ERROR: Too many threads for short alignments, please reduce number of threads or use -nt AUTO to determine it.
Hi there, This problem is known: the error message is not entirely correct, but the part "please
unread,
TODO
Q&A
ERROR: Too many threads for short alignments, please reduce number of threads or use -nt AUTO to determine it.
Hi there, This problem is known: the error message is not entirely correct, but the part "please
4/29/18
Emmanuel Toussaint
, …
Celine Brochier-Armanet
8
12/3/19
Q&A
Implementing Jackknifing
Many thanks Best wishes Céline Le mardi 3 décembre 2019 02:08:30 UTC+1, Minh Bui a écrit : Hi Celine,
unread,
TODO
Q&A
Implementing Jackknifing
Many thanks Best wishes Céline Le mardi 3 décembre 2019 02:08:30 UTC+1, Minh Bui a écrit : Hi Celine,
12/3/19
Ales Bucek
, …
Minh Bui
3
10/25/18
Q&A
"ERROR: Tree file does not start with an opening-bracket '(' (line 2 column 0)" after resuming from checkpoint
I believe such “old” problem was fixed… which version and command line did you use? Minh On 26 Oct
unread,
BUG
Possibly-resolved
Resolved
TODO
Q&A
"ERROR: Tree file does not start with an opening-bracket '(' (line 2 column 0)" after resuming from checkpoint
I believe such “old” problem was fixed… which version and command line did you use? Minh On 26 Oct
10/25/18
Iker Irisarri
, …
Minh Bui
5
10/11/18
Q&A
negative constraint tree search?
Hi Rob, Thanks for your interest. This feature is however not available. While it may sound simple
unread,
TODO
Q&A
negative constraint tree search?
Hi Rob, Thanks for your interest. This feature is however not available. While it may sound simple
10/11/18
Sergio Andrés Muñoz Gomez
, …
jp.fland...@gmail.com
7
9/29/17
Q&A
Numerical underflow error with GHOST model
Thank you Minh I should have taken care of the number of parameter ! This is a very basic point that
unread,
Noresponse
TODO
Q&A
Numerical underflow error with GHOST model
Thank you Minh I should have taken care of the number of parameter ! This is a very basic point that
9/29/17
Philip Ashton
,
Bui Quang Minh
7
11/7/17
Q&A
Problem running ancestral state reconstruction
Sorry it took me so long to respond. Yes, this fix works well. Thank you! On Thursday, September 28,
unread,
PLL
TODO
Q&A
Problem running ancestral state reconstruction
Sorry it took me so long to respond. Yes, this fix works well. Thank you! On Thursday, September 28,
11/7/17
steven.wad...@gmail.com
, …
Brendon Boudinot
5
11/26/20
Q&A
Feature suggestion: More than one user-defined constraint tree
Dear Minh, My apologies for the very late reply! For some reason I did not receive a notice that this
unread,
TODO
low-priority
Q&A
Feature suggestion: More than one user-defined constraint tree
Dear Minh, My apologies for the very late reply! For some reason I did not receive a notice that this
11/26/20