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IQ-TREE
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iqtree2/discussions
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YanYan
,
Minh Bui
3
7/9/20
Q&A
How to input mixed morphological and protein data
Thank you very much! I revised the nex file and the command as your suggestion. It works! Sorry for
unread,
Partition
amino
morphological
Q&A
How to input mixed morphological and protein data
Thank you very much! I revised the nex file and the command as your suggestion. It works! Sorry for
7/9/20
Fernando Carbayo
,
Minh Bui
3
5/19/20
Q&A
How to exclude third codon position from an analysis
Hi Minh, Many tahnks for your quick and direct reply! Best wishes, Fernando Carbayo Em segunda-feira,
unread,
Partition
exclude
position
Q&A
How to exclude third codon position from an analysis
Hi Minh, Many tahnks for your quick and direct reply! Best wishes, Fernando Carbayo Em segunda-feira,
5/19/20
DR
,
Minh Bui
2
5/7/20
Q&A
Question about performance of partition models
Hi there, Can you please provide more context about your data, eg, how many partitions, sequences,
unread,
MODEL
Partition
Question
Q&A
Question about performance of partition models
Hi there, Can you please provide more context about your data, eg, how many partitions, sequences,
5/7/20
Sarah Lock
,
Minh Bui
2
4/27/20
Q&A
IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT? - version 1.6.6
Hi Sarah, There is something wrong in the PLL library used internally in IQ-TREE to compute a
unread,
BUG
IQtreeErrors
Partition
Question
Request
error
iqtree
Q&A
IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT? - version 1.6.6
Hi Sarah, There is something wrong in the PLL library used internally in IQ-TREE to compute a
4/27/20
David Diaz Escandon
2
3/4/20
BUG: Mixed models IQtree 2.0-rc1
She actually post a question https://groups.google.com/d/topic/iqtree/LYhF3oxafto/discussion, but so
unread,
BUG
IQtreeErrors
Partition
error
BUG: Mixed models IQtree 2.0-rc1
She actually post a question https://groups.google.com/d/topic/iqtree/LYhF3oxafto/discussion, but so
3/4/20
John Soghigian
,
Minh Bui
2
11/10/19
Q&A
what happens to sites not specified in a partition file?
Hi John, The simple answer is Yes, IQ-TREE will ignore all positions not included in the partition
unread,
Partition
Question
codon
Q&A
what happens to sites not specified in a partition file?
Hi John, The simple answer is Yes, IQ-TREE will ignore all positions not included in the partition
11/10/19
Jacopo Martelossi
,
Minh Bui
3
6/25/19
Q&A
initial partitions influence on topology and branchlengths
Hi Minh, first of all thank's for your answer. I had already put some of your sugegstions in
unread,
Answered
Partition
Q&A
initial partitions influence on topology and branchlengths
Hi Minh, first of all thank's for your answer. I had already put some of your sugegstions in
6/25/19
Mese
,
Minh Bui
3
5/3/19
Q&A
IQtree 1.7.b9, MF+MERGE with -p creates best_scheme.nex file with __NA__
Hi Marianne, There is now a new option --out-alignment in the latest beta11 version: https://github.
unread,
-p
MERGE
ModelFinder
Partition
TODO
iqtree
Q&A
IQtree 1.7.b9, MF+MERGE with -p creates best_scheme.nex file with __NA__
Hi Marianne, There is now a new option --out-alignment in the latest beta11 version: https://github.
5/3/19
gusta10
, …
Minh Bui
7
2/5/19
Q&A
Too many iterations in tqli and numerical problems
Hi, I believe this assertion is now fixed in 1.7-beta8 version. Can you please check it and let me
unread,
Partition
codon
Q&A
Too many iterations in tqli and numerical problems
Hi, I believe this assertion is now fixed in 1.7-beta8 version. Can you please check it and let me
2/5/19
gusta10
,
Minh Bui
2
1/12/19
Q&A
ERROR too large ID using DNA and CODON5
Hi there, On 9 Jan 2019, at 3:49 pm, gusta10 <gus.san...@gmail.com> wrote: Hi all, I have
unread,
Answered
IQtreeErrors
Partition
Q&A
ERROR too large ID using DNA and CODON5
Hi there, On 9 Jan 2019, at 3:49 pm, gusta10 <gus.san...@gmail.com> wrote: Hi all, I have
1/12/19
Matt Girard
,
Minh Bui
4
6/14/18
Q&A
Running partitioned analysis with mixed data
Hi Matt, I see, indeed I suspected the same after looking at your partition file. To avoid heavy
unread,
Mixed_data
Partition
morphology
Q&A
Running partitioned analysis with mixed data
Hi Matt, I see, indeed I suspected the same after looking at your partition file. To avoid heavy
6/14/18
Steven Mussmann
,
Bui Quang Minh
3
5/2/17
Q&A
Partition finding error
Great, thank you. I will give this a try and report back. -Steve
unread,
IQtreeErrors
Partition
Q&A
Partition finding error
Great, thank you. I will give this a try and report back. -Steve
5/2/17
Filipe Romero
,
Bui Quang Minh
3
4/27/17
Q&A
Problem with partitioned analysis.
Thank you, Minh! Em quinta-feira, 27 de abril de 2017 09:48:27 UTC-3, Bui Quang Minh escreveu: Hi
unread,
BUG
Partition
branch
topology
Q&A
Problem with partitioned analysis.
Thank you, Minh! Em quinta-feira, 27 de abril de 2017 09:48:27 UTC-3, Bui Quang Minh escreveu: Hi
4/27/17