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IQ-TREE
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YanYan
,
Minh Bui
3
7/8/20
Q&A
CAT-like model
Hi there gain, It should be LG+C20+R4, not GTR20+… Minh On 6 Jul 2020, at 2:20 pm, YanYan <lilvyan
unread,
MODEL
Q&A
CAT-like model
Hi there gain, It should be LG+C20+R4, not GTR20+… Minh On 6 Jul 2020, at 2:20 pm, YanYan <lilvyan
7/8/20
Gabriel DUPRE
,
Minh Bui
2
6/12/20
Q&A
error message after tree construction and asr analysis with codon models ("ERROR: File not found MG")
Hi Gabriel, Simple answer: you forgot to set the sequence type as codon: -st CODON (for standard
unread,
IQtreeErrors
MODEL
codon
option
Q&A
error message after tree construction and asr analysis with codon models ("ERROR: File not found MG")
Hi Gabriel, Simple answer: you forgot to set the sequence type as codon: -st CODON (for standard
6/12/20
DR
,
Minh Bui
2
5/7/20
Q&A
Question about performance of partition models
Hi there, Can you please provide more context about your data, eg, how many partitions, sequences,
unread,
MODEL
Partition
Question
Q&A
Question about performance of partition models
Hi there, Can you please provide more context about your data, eg, how many partitions, sequences,
5/7/20
Michal Malszycki
,
Minh Bui
4
6/26/19
Q&A
Compare tree phylogenies calculated using different models
Ah ok, I didn't know that you have only one short gene. In that case, please do not use C20 or
unread,
Answered
MODEL
comparison
Q&A
Compare tree phylogenies calculated using different models
Ah ok, I didn't know that you have only one short gene. In that case, please do not use C20 or
6/26/19
Chang Ye
,
Minh Bui
8
5/29/19
Q&A
How to select model for binary irreversible sequence data?
Hi Minh Thanks for your advice. On Tue, May 28, 2019 at 9:06 AM Minh Bui <minh...@univie.ac.at
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Answered
MODEL
Question
irreversible
rate
Q&A
How to select model for binary irreversible sequence data?
Hi Minh Thanks for your advice. On Tue, May 28, 2019 at 9:06 AM Minh Bui <minh...@univie.ac.at
5/29/19
Mohak Sharda
,
Minh Bui
2
7/19/18
Q&A
Error while model testing before generating the tree for a multiple sequence alignment of a gene
Hi Mohak, Thanks for reporting this. Can you send me the log file and the alignment via personal
unread,
MODEL
Noresponse
error
Q&A
Error while model testing before generating the tree for a multiple sequence alignment of a gene
Hi Mohak, Thanks for reporting this. Can you send me the log file and the alignment via personal
7/19/18
Edward Braun
, …
Minh Bui
6
9/22/20
Q&A
Model selection for Lie Markov models
You don't need to provide a tree, IQ-TREE will find the root automatically. Minh On 14 Sep 2020,
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Answered
MODEL
Question
Q&A
Model selection for Lie Markov models
You don't need to provide a tree, IQ-TREE will find the root automatically. Minh On 14 Sep 2020,
9/22/20
Anthony Redmond
,
Minh Bui
3
3/8/18
Q&A
degrees of freedom and testing mixture model fit
Thanks Minh, That was helpful. I guess my concern was that in a case where say LG+C60 gives a very
unread,
Answered
MODEL
Q&A
degrees of freedom and testing mixture model fit
Thanks Minh, That was helpful. I guess my concern was that in a case where say LG+C60 gives a very
3/8/18
Xabier Vázquez-Campos
, …
taua...@gmail.com
8
9/26/17
Q&A
usage of PMSF
Hi again Stephen, I was missing a connection from my definition to how the problem is actually
unread,
Answered
BEST
MODEL
PMSF
Question
Q&A
usage of PMSF
Hi again Stephen, I was missing a connection from my definition to how the problem is actually
9/26/17
Karen Meusemann
,
Bui Quang Minh
4
11/20/16
Q&A
modeltest with partitioned dataset + heterotachy version
Hi Karen, On Nov 14, 2016, at 11:06 AM, Karen Meusemann <kmeus...@googlemail.com> wrote: Hi
unread,
ANT
BEST
MODEL
SELECT
THE
TO
WITH
Q&A
modeltest with partitioned dataset + heterotachy version
Hi Karen, On Nov 14, 2016, at 11:06 AM, Karen Meusemann <kmeus...@googlemail.com> wrote: Hi
11/20/16