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IQ-TREE
1–22 of 1859
We've now moved to
https://github.com/iqtree/
iqtree2/discussions
. Please ask your question there. This Google group is now closed and for archival purpose only.
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Lars Berling
4/27/23
Dating multiple trees --date-options "-n"
Hey, I am currently trying to simulate rooted time trees using IQ-tree. The first thing I noticed
unread,
BUG
LSD2
Dating multiple trees --date-options "-n"
Hey, I am currently trying to simulate rooted time trees using IQ-tree. The first thing I noticed
4/27/23
ffish
9/22/22
BUG: IQTree crashes when using -wpl
Hello, Thank you for developing and maintaining iqtree, it's really the best! Last month I posted
unread,
BUG
IQtreeErrors
crash
BUG: IQTree crashes when using -wpl
Hello, Thank you for developing and maintaining iqtree, it's really the best! Last month I posted
9/22/22
Jing Zhang
,
Minh Bui
2
7/15/20
Q&A
iqtree-mpi warnings for Memory required per CPU-core and run cannot finish
Can you please paste the first 10 lines and the last 10 lines of the log file. Also, paste the line
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BUG
iqtree
mpi
Q&A
iqtree-mpi warnings for Memory required per CPU-core and run cannot finish
Can you please paste the first 10 lines and the last 10 lines of the log file. Also, paste the line
7/15/20
Mukta Joshi
6/5/20
Q&A
Error while choosing right partitioning scheme
ERROR: partitionmodelplen.cpp:146: virtual double PartitionModelPlen::optimizeParameters(int, bool,
unread,
BUG
error
likelihood
Q&A
Error while choosing right partitioning scheme
ERROR: partitionmodelplen.cpp:146: virtual double PartitionModelPlen::optimizeParameters(int, bool,
6/5/20
Emma Carroll
,
Minh Bui
2
5/10/20
Q&A
Bug: error when adding date file
Hi Emma, It seems like something wrong with your dates. Can you please check the format again, eg
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BUG
IQtreeErrors
error
tree_tag
Q&A
Bug: error when adding date file
Hi Emma, It seems like something wrong with your dates. Can you please check the format again, eg
5/10/20
Gabriel DUPRE
,
Minh Bui
3
5/27/20
Q&A
Question about an error message with a tree topology test, -au command and bp-RELL
Hi Minh, Thank you very much for your answer. Cheers Gabriel Le jeudi 7 mai 2020 02:36:09 UTC+2, Minh
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AU_test
BUG
Info
error
topology
tree
Q&A
Question about an error message with a tree topology test, -au command and bp-RELL
Hi Minh, Thank you very much for your answer. Cheers Gabriel Le jeudi 7 mai 2020 02:36:09 UTC+2, Minh
5/27/20
Sarah Lock
,
Minh Bui
2
4/27/20
Q&A
IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT? - version 1.6.6
Hi Sarah, There is something wrong in the PLL library used internally in IQ-TREE to compute a
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BUG
IQtreeErrors
Partition
Question
Request
error
iqtree
Q&A
IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT? - version 1.6.6
Hi Sarah, There is something wrong in the PLL library used internally in IQ-TREE to compute a
4/27/20
David Diaz Escandon
2
3/4/20
BUG: Mixed models IQtree 2.0-rc1
She actually post a question https://groups.google.com/d/topic/iqtree/LYhF3oxafto/discussion, but so
unread,
BUG
IQtreeErrors
Partition
error
BUG: Mixed models IQtree 2.0-rc1
She actually post a question https://groups.google.com/d/topic/iqtree/LYhF3oxafto/discussion, but so
3/4/20
Bruno Donzelli
, …
Minh Bui
3
3/4/20
Q&A
iqtree 2.0 crushes at while computing bootstrap consensus tree..
Hi there, Pls add “--no-terrace” option, it was discussed in another recent thread. Thanks! Minh On 3
unread,
BUG
IQtreeErrors
Q&A
iqtree 2.0 crushes at while computing bootstrap consensus tree..
Hi there, Pls add “--no-terrace” option, it was discussed in another recent thread. Thanks! Minh On 3
3/4/20
Roey Angel
,
Minh Bui
6
2/1/20
Q&A
IQ-TREE with the -fast option is s
Hi Roey, Sorry for the delay - I'm on annual leave. Can you pls send to my personal email the log
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BUG
Q&A
IQ-TREE with the -fast option is s
Hi Roey, Sorry for the delay - I'm on annual leave. Can you pls send to my personal email the log
2/1/20
edmu...@gmail.com
, …
Conrad van den Ende
3
4/18/19
Q&A
BUG - constraint tree ERROR
Hi Minh, Thanks yes it was a problem with the nexus file. Some characters were ambiguous (one species
unread,
Answered
BUG
error
topology
Q&A
BUG - constraint tree ERROR
Hi Minh, Thanks yes it was a problem with the nexus file. Some characters were ambiguous (one species
4/18/19
Chang Ye
,
Minh Bui
3
10/7/18
Q&A
Why iq-tree build bionj tree and parsimony tree again when rerun from checkpoint?
I can't not reproduce it in other dataset. Seem that there is some error in my previous run. It
unread,
Answered
BUG
checkpoint
Q&A
Why iq-tree build bionj tree and parsimony tree again when rerun from checkpoint?
I can't not reproduce it in other dataset. Seem that there is some error in my previous run. It
10/7/18
Jan
,
Minh Bui
2
8/1/18
Q&A
IQTREE Web Server Not Working?
Dear Jan and others: There has been a severe hardware failure. The admin just recovered it
unread,
BUG
Q&A
IQTREE Web Server Not Working?
Dear Jan and others: There has been a severe hardware failure. The admin just recovered it
8/1/18
Alexey Kozlov
,
Minh Bui
4
7/21/18
Q&A
IQTREE 1.6.6 incorrectly handles RAxML-style partition files with multiple blocks
Hi Alexey, I tried with an example data set here and IQ-TREE v1.6.6 loaded correctly (ie fragmented
unread,
BUG
Resolved
Q&A
IQTREE 1.6.6 incorrectly handles RAxML-style partition files with multiple blocks
Hi Alexey, I tried with an example data set here and IQ-TREE v1.6.6 loaded correctly (ie fragmented
7/21/18
Chloe Ambroset
, …
Minh Bui
5
8/21/18
Q&A
Crash with Tree topology test using webserver
Hi David and Chloe, Here is the thread explaining it: https://groups.google.com/forum/#!topic/iqtree/
unread,
Answered
BUG
IQtreeErrors
Q&A
Crash with Tree topology test using webserver
Hi David and Chloe, Here is the thread explaining it: https://groups.google.com/forum/#!topic/iqtree/
8/21/18
Karen Siu Ting
,
Minh Bui
4
3/18/18
Q&A
BUG: IQtree crashes during bootstrap running with predefined codon model
Hi Karen, While fixing this bug, I notice some obvious error in your alignments: That means, the
unread,
BUG
IQtreeErrors
Resolved
Q&A
BUG: IQtree crashes during bootstrap running with predefined codon model
Hi Karen, While fixing this bug, I notice some obvious error in your alignments: That means, the
3/18/18
Ales Bucek
, …
Minh Bui
3
10/25/18
Q&A
"ERROR: Tree file does not start with an opening-bracket '(' (line 2 column 0)" after resuming from checkpoint
I believe such “old” problem was fixed… which version and command line did you use? Minh On 26 Oct
unread,
BUG
Possibly-resolved
Resolved
TODO
Q&A
"ERROR: Tree file does not start with an opening-bracket '(' (line 2 column 0)" after resuming from checkpoint
I believe such “old” problem was fixed… which version and command line did you use? Minh On 26 Oct
10/25/18
Max Schön
, …
Minh Bui
6
7/9/18
Q&A
iqtree crashes when using ultrafast bootstraps and tree topology contraint
Dear Swati, I believe such “old" problem has been resolved. So before we can provide further
unread,
BUG
IQtreeErrors
Resolved
topology
Q&A
iqtree crashes when using ultrafast bootstraps and tree topology contraint
Dear Swati, I believe such “old" problem has been resolved. So before we can provide further
7/9/18
Filipe Romero
,
Bui Quang Minh
3
4/27/17
Q&A
Problem with partitioned analysis.
Thank you, Minh! Em quinta-feira, 27 de abril de 2017 09:48:27 UTC-3, Bui Quang Minh escreveu: Hi
unread,
BUG
Partition
branch
topology
Q&A
Problem with partitioned analysis.
Thank you, Minh! Em quinta-feira, 27 de abril de 2017 09:48:27 UTC-3, Bui Quang Minh escreveu: Hi
4/27/17
dw.p...@gmail.com
,
Bui Quang Minh
2
1/5/17
Q&A
bug report: crash during tree search, partitioned DNA and codon data
Dear user, Thanks for the report. This sounds like a bug. Can you please send me the alignments,
unread,
BUG
Q&A
bug report: crash during tree search, partitioned DNA and codon data
Dear user, Thanks for the report. This sounds like a bug. Can you please send me the alignments,
1/5/17
Joaquim Martins Junior
,
Bui Quang Minh
4
2/16/16
Q&A
IQTree 1.3.13 crashes during tree search with partitioned dataset
Dear Joachim, as it turned out the crash was likely due to -vvv option (verbose mode). This option
unread,
BUG
Question
Q&A
IQTree 1.3.13 crashes during tree search with partitioned dataset
Dear Joachim, as it turned out the crash was likely due to -vvv option (verbose mode). This option
2/16/16
Cuong Dang
, …
Bui Quang Minh
7
12/20/16
IQ-TREE crash
Hi Alicia, please do not perform both ultrafast bootstrap (-bb) and standard bootstrap (-bo) within
unread,
BUG
IQ-TREE crash
Hi Alicia, please do not perform both ultrafast bootstrap (-bb) and standard bootstrap (-bo) within
12/20/16