Converting XLSX files into BED or BAM files

[Leena Shah]

Hello,

I would like to upload chromatin immunoprecipitation followed by sequencing (ChIP-seq) data onto the Integrated Genome Browser, but I am having some issues with the file format.

This is the source of the dataset: 

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE135209 

At the link above, under “Supplementary file,” I can download the version of the XLSX files. However, in order to upload them on the Integrated Genome Browser, I need to use BED or BAM files. I am wondering if you can tell me how I can convert XLSX files into BED or BAM files?

Thank you,

Leena Shah

[Nowlan Freese]

I converted the files to bedgraph since that's what the data resembled to me. Let me know if this works, otherwise we can try something different.

Best,

Nowlan