object binding

[G.Launay]

Hi everyone,

first message here.
Thanks for releasing the intact api and documenting it.
Is there a way in the current api to perform the binding of object(s)
(and manipulate it as a java object) from a curation xml file ?
I presume the answer is no as it is supposed to be accessed through an
oracle/postgres database and is therefore loaded "on the fly" into the
database.

I am aiming at selectively extract informations/relationships between
intact interactions to populate a "non-standard" database.

Thanks for reading :)

[sam]

Hi Guilaume,

There is indeed a way to read PSI-MI XML data into a java object model, that is, using the java parser we wrote.

You can download the library [1] (psi25-xml-1.7.9-bin-with-dependencies.zip) and try out the few code sample we made available [2].

I hope that helps

Cheers

Sam

[1] http://code.google.com/p/psimi/downloads/list

[2] http://code.google.com/p/psimi/wiki/PsimiExamples