RE mint uniprot problem

[leonardo...@gmail.com]

Dear intact developer,
could you check the error ive sent to you last time for the UniProt protein retriever and the new database NextProt
thanks

Leonardo

MINT Group

[Bruno Aranda]

Hi Leonardo,

It helps much more if you already create a JUnit test that fails showing your problem. I have created such test in the intact-uniprot module and I cannot reproduce the problem. I cannot commit the test now because googlecode is under maintenance today. The test looks like:

@Test

    public void retrieveByUniprotId2() throws Exception {

        Collection<UniprotProtein> prots = getUniprotService().retrieve( "Q96EU7" );

        final UniprotProtein uniprotProtein = prots.iterator().next();

        assertEquals( "Q96EU7", uniprotProtein.getPrimaryAc() );

        assertEquals( "C1GALT1-specific chaperone 1", uniprotProtein.getDescription());

        assertEquals(4, uniprotProtein.getSynomyms().size());

    }

You can try it in the UniprotRemoteServiceTest inside the intact-uniprot module (under bridges).

Can it be the case that you are using an outdated version of the intact-uniprot module? The latest is 2.1.4-SNAPSHOT, you may want to try this one if you are not using it.

You can run mvn dependency:tree in your project and see what versions of intact-uniprot and uniprotjapi you are using...

Hope this helps!

Bruno