About the guidence of PSI MI XML 2.5 Java Parser

[曹亚强]

Dear All Developers:

​ I'm new to PSI MI XML 2.5 and only know the basic of Java. I wonder if there is any help documentation for the java library?​ 

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Best Regards,

CAO Yaqiang

CAS-MPG Partner Institute for Computational Biology (PICB)
Shanghai Institutes for Biological Sciences (SIBS)
Chinese Academy of Sciences (CAS)
Room503, ShengLi Building, 320 Yueyang Road, Shanghai 200031, P.R.China
Tel: (+86)-21-54920499
Mobile: 15021322891

[mar...@ebi.ac.uk]

Hello,

You will be able to see some code examples here :
http://code.google.com/p/psimi/wiki/PsimiExamples.

If you want the latest jar, you can download the psi25-xml jar with its
dependencies here :
http://code.google.com/p/psimi/downloads/detail?name=psi25-xml-1.8.3-distribution.zip.
If you use maven:
- add this dependency to your pom file :
<dependency>
<artifactId>psi25-xml</artifactId>
<groupId>psidev.psi.mi</groupId>
<version>1.8.3</version>
</dependency>
- add this repository to your pom file :
<repository>
<id>nexus</id>
<name>IntAct Nexus</name>
<url>http://www.ebi.ac.uk/intact/maven/nexus/content/groups/public/</url>
</repository>

If you need the java source code of our psi-XML parser, it is available
here : http://psimi.googlecode.com/svn/trunk/

You can find some documentation about the PSI MI XML 2.5 schema here :
http://psidev.sourceforge.net/molecular_interactions/rel25/doc/. The
schema itself is available here :
http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/src/MIF254.xsd.
We also wrote some documentation about how to write a valid PSI-XML 2.5
file here : http://code.google.com/p/psimi/wiki/PsimiXMLSpecifications.

If you want some real data in psi-xml 2.5 to play with, have a look at our
FTP site here : ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psi25/

Don't hesitate to contact us again if you have more questions about our
java library for parsing/writing the XML files.

Regards,

Marine

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