I've had issues like that when using uac. Since when something runs in admin mode it uses a secondary desktop. Try troubleshooting by trying a variation of admin mode or service mode. Might want to try moving your uac settings down one so it doesn't use a secondary desktop.
Just a few things to try out.
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I personally had the most luck with enabling service mode and start eith/before login (the one that makes it work at the login screen).