Table of Contents Alert: The EMBO Journal, Vol. 40, No. 19, 01 October 2021

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Cover Image The EMBO Journal
Volume 40, Issue 19

01 October 2021

On the cover: Nanobodies targeting SARS-CoV-2 variants. In this issue of The EMBO Journal, Thomas Güttler, Metin Aksu, Matthias Dobbelstein, Dirk Görlich and colleagues developed single-domain antibodies of camelid (alpaca) origin, dubbed "nanobodies", that potently neutralize SARS-CoV-2 by blocking the Spike's receptor-binding domain (RBD). Image concept by the authors; illustration by SciStories LLC.


Review

Open AccessHighlight
Autophagy in major human diseases
Daniel J Klionsky, Giulia Petroni, Ravi K Amaravadi, Eric H Baehrecke, Andrea Ballabio, Patricia Boya, José Manuel Bravo-San Pedro, Ken Cadwell, Francesco Cecconi, Augustine M K Choi, Mary E Choi, Charleen T Chu, Patrice Codogno, Maria Isabel Colombo, Ana Maria Cuervo, Vojo Deretic, Ivan Dikic, Zvulun Elazar, Eeva-Liisa Eskelinen, Gian Maria Fimia, David A Gewirtz, Douglas R Green, Malene Hansen, Marja Jäättelä, Terje Johansen, Gábor Juhász, Vassiliki Karantza, Claudine Kraft, Guido Kroemer, Nicholas T Ktistakis, Sharad Kumar, Carlos Lopez-Otin, Kay F Macleod, Frank Madeo, Jennifer Martinez, Alicia Meléndez, Noboru Mizushima, Christian Münz, Josef M Penninger, Rushika M Perera, Mauro Piacentini, Fulvio Reggiori, David C Rubinsztein, Kevin M Ryan, Junichi Sadoshima, Laura Santambrogio, Luca Scorrano, Hans-Uwe Simon, Anna Katharina Simon, Anne Simonsen, Alexandra Stolz, Nektarios Tavernarakis, Sharon A Tooze, Tamotsu Yoshimori, Junying Yuan, Zhenyu Yue, Qing Zhong, Lorenzo Galluzzi, Federico Pietrocola

EMBO J (2021) 40: e108863 | First Published: 30 August 2021

This review provides an exhaustive overview of the contribution of autophagy to multiple pathological phenotypes in vivo, and discusses the therapeutic potential of autophagy modulation in disease prevention and treatment.

    Articles

    Open AccessHighlight
    Neutralization of SARS‐CoV‐2 by highly potent, hyperthermostable, and mutation‐tolerant nanobodies
    Thomas Güttler, Metin Aksu, Antje Dickmanns, Kim M. Stegmann, Kathrin Gregor, Renate Rees, Waltraud Taxer, Oleh Rymarenko, Jürgen Schünemann, Christian Dienemann, Philip Gunkel, Bianka Mussil, Jens Krull, Ulrike Teichmann, Uwe Groß, Volker C Cordes, Matthias Dobbelstein, Dirk Görlich

    EMBO J (2021) 40: e107985 | First Published: 24 July 2021

    Single-domain camelid antibodies that neutralize a range of common and emerging immune-escape mutant strains of SARS-CoV-2 may constitute an easily-producible option for treatment of COVID-19 patients.

      Open Access
      Identification of lectin receptors for conserved SARS‐CoV‐2 glycosylation sites
      David Hoffmann, Stefan Mereiter, Yoo Jin Oh, Vanessa Monteil, Elizabeth Elder, Rong Zhu, Daniel Canena, Lisa Hain, Elisabeth Laurent, Clemens Grünwald-Gruber, Miriam Klausberger, Gustav Jonsson, Max J Kellner, Maria Novatchkova, Melita Ticevic, Antoine Chabloz, Gerald Wirnsberger, Astrid Hagelkruys, Friedrich Altmann, Lukas Mach, Johannes Stadlmann, Chris Oostenbrink, Ali Mirazimi, Peter Hinterdorfer, Josef M Penninger

      EMBO J (2021) 40: e108375 | First Published: 10 August 2021

      The lectin receptors Clec4g and CD209c bind to the glycosylated SARS-CoV-2 Spike protein to interfere with Spike binding to cell surfaces and SARS-CoV-2 infection.

        Open Access
        Mitotic WNT signalling orchestrates neurogenesis in the developing neocortex
        Fabio Da Silva, Kaiqing Zhang, Anneline Pinson, Edoardo Fatti, Michaela Wilsch-Bräuninger, Jessica Herbst, Valerie Vidal, Andreas Schedl, Wieland B Huttner, Christof Niehrs

        EMBO J (2021) 40: e108041 | First Published: 25 August 2021

        WNT/STOP (STabilization Of Proteins) signalling is the primary driver of neuronal differentiation of progenitor cells, while WNT/β-catenin signalling predominantly regulates progenitor cell self-renewal.

          Open Access
          NDST3 deacetylates α‐tubulin and suppresses V‐ATPase assembly and lysosomal acidification
          Qing Tang, Mingming Liu, Yang Liu, Ran-Der Hwang, Tao Zhang, Jiou Wang

          EMBO J (2021) 40: e107204 | First Published: 25 August 2021

          NDST3-dependent deacetylation of α-tubulin prevents lysosomal hyperacidification and proteotoxicity associated with C9orf72 hexanucleotide repeat expansion in neurodegenerative disorders.

            Open Access
            A Brucella effector modulates the Arf6‐Rab8a GTPase cascade to promote intravacuolar replication
            Elizabeth Borghesan, Erin P Smith, Sebenzile Myeni, Kelsey Binder, Leigh A Knodler, Jean Celli

            EMBO J (2021) 40: e107664 | First Published: 23 August 2021

            Brucella abortus effector protein BspF binding to host GTPase-activating protein ACAP1 facilitates intracellular bacterial growth by decreasing retrograde vesicular transport to the trans-Golgi network.

              Role of endopeptidases in peptidoglycan synthesis mediated by alternative cross‐linking enzymes in Escherichia coli
              Henri Voedts, Delphine Dorchêne, Adam Lodge, Waldemar Vollmer, Michel Arthur, Jean-Emmanuel Hugonnet

              EMBO J (2021) 40: e108126 | First Published: 12 August 2021

              Peptidoglycan expansion requires a minimum set of dual specificity endopeptidases that hydrolyse both the most abundant D,D-transpeptidase crosslinks, but also alternative crosslinks formed by L,D-transpeptidases.

                Fusion Conference
                Mechanism of transcription initiation and primer generation at the mitochondrial replication origin OriL
                Azadeh Sarfallah, Angelica Zamudio-Ochoa, Michael Anikin, Dmitry Temiakov

                EMBO J (2021) 40: e107988 | First Published: 23 August 2021

                Replication of human mitochondrial DNA involves transcript slippage and RNA primer handover/protection within a primosome formed by mtRNAP and DNA polymerase PolG.

                  SNP rs4971059 predisposes to breast carcinogenesis and chemoresistance via TRIM46‐mediated HDAC1 degradation
                  Zihan Zhang, Xiaoping Liu, Lei Li, Yang Yang, Jianguo Yang, Yue Wang, Jiajing Wu, Xiaodi Wu, Lin Shan, Fei Pei, Jianying Liu, Shu Wang, Wei Li, Luyang Sun, Jing Liang, Yongfeng Shang

                  EMBO J (2021) 40: e107974 | First Published: 30 August 2021

                  Enhanced tumor cell proliferation upon HDAC1 downregulation, induced by enhanced TRIM46 E3 ligase expression due to a cancer-associated polymorphic switch, exemplifies a tumor-suppressive role of HDAC1 in this context.

                    Open Access
                    Msps governs acentrosomal microtubule assembly and reactivation of quiescent neural stem cells
                    Qiannan Deng, Ye Sing Tan, Liang Yuh Chew, Hongyan Wang

                    EMBO J (2021) 40: e104549 | First Published: 09 August 2021

                    The microtubule regulator Mini Spindles (Msps)/XMAP215 promotes Drosophila neural stem cell activation, by targeting adhesion molecule E-cadherin via Kinesin-2 motors to neural stem cell-neuropil contact sites.

                      Open Access
                      Multi‐modal adaptor‐clathrin contacts drive coated vesicle assembly
                      Sarah M Smith, Gabrielle Larocque, Katherine M Wood, Kyle L Morris, Alan M Roseman, Richard B Sessions, Stephen J Royle, Corinne J Smith

                      EMBO J (2021) 40: e108795 | First Published: 06 September 2021

                      Single particle cryo-EM analysis reveals how Adaptor Protein 2 promotes clathrin assembly during endocytosis by crosslinking clathrin triskelia at different locations in the cage.

                        Cryo‐EM analysis provides new mechanistic insight into ATP binding to Ca2+‐ATPase SERCA2b
                        Yuxia Zhang, Satoshi Watanabe, Akihisa Tsutsumi, Hiroshi Kadokura, Masahide Kikkawa, Kenji Inaba

                        EMBO J (2021) 40: e108482 | First Published: 30 August 2021

                        Structural analysis shows human SERCA2b ATPase to adopt an unexpectedly compact functional state prior to ATP binding, suggesting a new mechanism of ATP binding to SERCA family members.

                          Resource

                          Open AccessHighlight
                          Fluc‐EGFP reporter mice reveal differential alterations of neuronal proteostasis in aging and disease
                          Sonja Blumenstock, Elena Katharina Schulz-Trieglaff, Kerstin Voelkl, Anna-Lena Bolender, Paul Lapios, Jana Lindner, Mark S Hipp, F Ulrich Hartl, Rüdiger Klein, Irina Dudanova

                          EMBO J (2021) 40: e107260 | First Published: 19 August 2021

                          In vivo expression of conformationally unstable EGFP-fused firefly luciferase, which forms intracellular foci and exhibits reduced activity upon proteotoxic stress, elucidates the occurrence of proteostasis decline in mouse models of aging and tauopathy but not Huntington's disease.

                            Corrigendum

                            Free Access
                            Complete suppression of Htt fibrillization and disaggregation of Htt fibrils by a trimeric chaperone complex
                            Annika Scior, Kristin Arnsburg, Manuel Iburg, Katrin Juenemann, Maria Lucia Pigazzini, Barbara Mlody, Dmytro Puchkov, Anne Ast, Alexander Buntru, Josef Priller, Erich E Wanker, Alessandro Prigione, Janine Kirstein

                            EMBO J (2021) 40: e109413 | First Published: 04 October 2021

                            This article is a correction.

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