The key part of the output log file is here:
===
2025/08/22 15:49:51 Emission totals:
2025/08/22 15:49:51 gOrg, NaN μg/s
2025/08/22 15:49:51 pOrg, 0 μg/s
2025/08/22 15:49:51 PM2_5, NaN μg/s
2025/08/22 15:49:51 gNH, NaN μg/s
2025/08/22 15:49:51 pNH, 0 μg/s
2025/08/22 15:49:51 gS, NaN μg/s
2025/08/22 15:49:51 pS, 0 μg/s
2025/08/22 15:49:51 gNO, NaN μg/s
2025/08/22 15:49:51 pNO, 0 μg/s
===
This is saying that InMAP is reading the sum of the emissions as 0 for some pollutants and NaN for other ones. The NaN totals may happen if there is a row in the emissions shapefile that is NaN or NULL or some other unreadable value. And then if there is one NaN value that will propagate through to all the other numbers it touches as InMAP is running.
Hope that helps!
Chris