Help!!!Err During bingo.CheckMoleculeTable and

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28895462@qq.com lihe183

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Aug 10, 2011, 11:33:03 AM8/10/11
to indigo-dev
hi,
"Application Failure sqlservr.exe 2007.100.1600.22 in
1.6.4239.31783_bingo-core-c.dll 0.0.0.0 at offset 001c9f1d" by
Executing "select * from
bingo.CheckMoleculeTable('MolTable','id','mollr')" in sqlserver 2005.

and
Executing "select * from bingo.SearchSub('MolTable', 'NNC1C=CC=CC=1',
'')"

Err:
"
System.Exception: Key cmf-dict isn't present in the configuration
table
System.Exception:
indigo.BingoConfig._get(SqlConnection connection, String
bingo_schema, String name, Int32 id, String table)
indigo.BingoConfig.getBinary(SqlConnection connection, String
bingo_schema, String name, Int32 id)
indigo.Bingo.prepareContext(SqlConnection connection, String
bingo_schema, Int32 id, ContextFlags flags)
indigo.Bingo._ExecuteBingoOperation(SqlString bingo_schema,
bingoOperationDelegate operationDelegate, bingoGetIndexDataDelegate
getBingoDataDelegate, BingoOp op_flags)
indigo.Bingo._MakeSearch(SqlString query, SqlString table,
SqlString options, SqlString bingo_schema, String search_type, Boolean
highlighting, Object[] ext_options)
indigo.Bingo.SearchSub(SqlString table, SqlString query, SqlString
options, SqlString bingo_schema)
。"

Thanks..

Mikhail Rybalkin

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Aug 11, 2011, 6:15:44 AM8/11/11
to indig...@googlegroups.com, 28895462@qq.com lihe183
Hello,

What version of SQL Server do you have? You said that is was SQL Server
2005,
but "Application Failure sqlservr.exe 2007.100.1600.22" means that you
are using
SQL Server 2008. Are you using 32-bit or 64-bit version?
It might be some issues with installation. Could you uninstall existing
Bingo installation, install it again and send an output from the install
script:
bingo-sqlserver-install.bat -database "your database" -y > output.txt

> System.Exception: Key cmf-dict isn't present in the configuration

Could you also send an output from
select * from bingo.CONFIG_BIN
In this table Bingo keeps its configuration parameters and error means
that this table might be empty or invalid.

Also could you send a result from
select OBJECT_ID('MolTable')

--
With best regards,
Mikhail

28895462@qq.com lihe183

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Aug 11, 2011, 10:22:00 AM8/11/11
to indigo-dev
Dear Mikhail,

I separately installed in two computers,under different
circumstances.One of the operating system is win2003 server 32-bit
version,with the database of Microsoft SQL Server 2005 - 9.00.3042.00
(Intel X86) Enterprise Edition on Windows NT 5.2 (Build 3790: Service
Pack 2).The other is under winxp 32-bit version,with the database of
sqlservr.exe 2007.100.1600.22 32-bit version.When executing "select *
from
bingo.CheckMoleculeTable('MolTable','id','mollr')",both failed,turning
out with error like "Application Failure sqlservr.exe XXXXX in
1.6.4239.31783_bingo-core-c.dll 0.0.0.0 at offset
001c9f1d".Installation didn't occur any error.According to your
request,executing "select * from bingo.CONFIG_BIN",it turned out with
valid record.While executing "select OBJECT_ID('MolTable') ",the
digital ID showed up.


I Send Installation Log File To You.

李和

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Aug 11, 2011, 10:30:13 AM8/11/11
to rybalkin, indigo-dev
 
 
------------------ 原始邮件 ------------------
发件人: "Mikhail Rybalkin"<ryba...@ggasoftware.com>;
发送时间: 2011年8月11日(星期四) 晚上6:15
抄送: "2889...@qq.com lihe183"<2889...@qq.com>;
主题: Re: [indigo-dev] Help!!!Err During bingo.CheckMoleculeTable and
 
Hello,

What version of SQL Server do you have? You said that is was SQL Server 
2005,
but "Application Failure  sqlservr.exe 2007.100.1600.22" means that you 
are using
SQL Server 2008. Are you using 32-bit or 64-bit version?
It might be some issues with installation. Could you uninstall existing 
Bingo installation, install it again and send an output from the install 
script:
bingo-sqlserver-install.bat -database "your database" -y > output.txt

> System.Exception: Key cmf-dict isn't present in the configuration
Could you also send an output from
     select * from bingo.CONFIG_BIN
In this table Bingo keeps its configuration parameters and error means 
that this table might be empty or invalid.

Also could you send a result from
select OBJECT_ID('MolTable')

--
With best regards,
Mikhail

On 8/10/2011 19:33, 2889...@qq.com lihe183 wrote:
> hi,
>   "Application Failure  sqlservr.exe 2007.100.1600.22 in
4.log
Err2.GIF

Mikhail Rybalkin

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Aug 13, 2011, 4:23:57 AM8/13/11
to indigo-dev
Hello,

Log file seems to be correct. I think that the problem is caused by
some unexpected issues with language settings (they affect internal
representation of strings). We will try to reproduce your envelopment
and check Bingo on that.
Could you tell what language in used in your system and SQL Server.
And could you send a result of this query DBCC USEROPTIONS.

Unfortunately I will be on vacation on the next week and I cannot help
you until 22 August. Your bug report is very important because we
cannot check Bingo on the all different languages, operating systems,
and etc.

With best regards,
Mikhail

28895462@qq.com lihe183

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Aug 14, 2011, 9:18:35 AM8/14/11
to indigo-dev
Dear Mikhail,
thank you for your supporting,all my operating system and Ms Sqls
are simplified Chinese character versions.And is 32-bit version.You
can review my computer with long distance operation.

I hope you will have a pleasant holiday.

With best regards,
He Li

Mikhail Rybalkin

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Aug 23, 2011, 5:46:31 AM8/23/11
to indigo-dev
Hello He Li,

We have reproduced this issue and will fix it soon.

With best regards,
Mikhail

李和

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Aug 23, 2011, 10:25:53 AM8/23/11
to indigo-dev
 
Dear Mikhail,
    Thanks,The function (CONVERT STRUCTURE TO NAME) is not Exists in bingo. and suggest that whole molecule properties such as CLogP.
 
    he li
 
------------------ Original ------------------
From:  "rybalkin"<ryba...@ggasoftware.com>;
Date:  Tue, Aug 23, 2011 05:46 PM
To:  "indigo-dev"<indig...@googlegroups.com>;
Subject:  [indigo-dev] Re: Help!!!Err During bingo.CheckMoleculeTable and

Mikhail Rybalkin

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Aug 24, 2011, 9:06:54 AM8/24/11
to indigo-dev
Hello He Li,

Unfortunately there is no structure to name conversion and molecule
descriptors computation (CLogP) functionality in Bingo. And they are
not planned to be implemented in near future.
For calculating molecule descriptors there was a discussion here:
http://blueobelisk.shapado.com/questions/what-are-the-free-tools-for-molecular-descriptors-calculation
You may find there some tools for this.

For structure to name conversion you may find some useful links here:
http://blueobelisk.shapado.com/questions/how-to-convert-a-structure-into-a-name

With best regards,
Mikhail

Mikhail Rybalkin

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Aug 29, 2011, 8:21:30 AM8/29/11
to indigo-dev
Hello He Li,

We have updated Bingo version to 1.6.1 where this issue has been
fixed.
You can download it as usual in the downloads section on our site:
http://ggasoftware.com/download

Please, let us know about the result.

Thank you for providing this bug report!

With best regards,
Mikhail Rybalkin
GGA Software Services LLC

李和

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Aug 30, 2011, 8:22:29 AM8/30/11
to indigo-dev
Dear Mikhail,
That's OK,Thanks.
 
 he li
 
 
------------------ Original ------------------
From:  "rybalkin"<ryba...@ggasoftware.com>;
Date:  Mon, Aug 29, 2011 08:21 PM
To:  "indigo-dev"<indig...@googlegroups.com>;
Subject:  [indigo-dev] Re: Help!!!Err During bingo.CheckMoleculeTable and
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