Color by base modification not displaying

[Dario Dilernia]

Hello,

I'm looking at a reference HG002 alignment from PacBio that contains the Mm and Ml tags capturing methylation information, but when look at this bam file in IGV, there is no option to color by base modification.

This is the bam file: https://downloads.pacbcloud.com/public/dataset/HG002-CpG-methylation-202202/HG002.GRCh38.haplotagged.bam

And this is the menu path where I'm looking at:  View > Preferences > Alignments > Color alignments by...

[igv-help]

The base mod options are in the right-click menu,  right-click over the alignment track and you will find the options under "Color by".