Bam file, how to interpret colors and other things

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Chorong Park

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Jun 13, 2024, 3:29:08 PMJun 13
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I don't seem to find those interpretations of bam file.
like colors, white bar vs gray vs red, arrows at the upper part.

I think I saw what those mean in IGV website but I can't find.

Could anyone tell me where I should look those up?
Thanks tons
Screenshot 2024-06-13 at 2.25.09 PM.png

igv-help

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Jun 13, 2024, 3:51:02 PMJun 13
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All the IGV documentation is at https://igv.org/doc/desktop/  For  information about alignment tracks there are multiple pages under User Guide > Tracks and Data Types > Alignments 

Chorong Park

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Jun 13, 2024, 4:14:20 PMJun 13
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Thanks!!
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