xvfb-run --auto-servernum --server-num=1 java -Xmx40000m -jar ./IGV_2.4.6/igv.jar -b ./b.trackVisual_V2/IGV_snapshots.bat
IGV_snapshots.bat is like below
new
genome hg19
snapshotDirectory ./b.trackVisual_V2/
load ./E034-H3K27ac.nochrM.tdf
load ./E037-H3K27ac.nochrM.tdf
maxPanelHeight 40
goto chr11:65181760-65199890
snapshot chr11-65189012-65192638.png
goto chr19:47608816-47621586
snapshot chr19-47613924-47616478.png
exit
Besides, the shown track is not auto-scaled as bam input anymore.
Do you have any suggestion?
Thanks a lot,
Lei