Non-opening file.

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Анастасия Вишницкая

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May 31, 2020, 12:16:14 PM5/31/20
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  1. Hello! I know that the trouble is frequent, but I can't understand
 how to deal with it.
1) Linux Ubuntu (on a virtual mashine), igv 2.8.2
2) I tryed to open file, made by bowtie (both sam and bam)
3) I expected opening the file and seeng at least something.

Безымянный111.png

4) The shot is here. 

Безымянный222.png

5) Another shot.

Please, explain in simple words and add commands, 'cause English is not my native language and my programming skills are poor.

James Robinson

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May 31, 2020, 12:59:44 PM5/31/20
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Hello, you need to zoom into a region of 30KB or less to see alignments.   That is what the message means that says "zoom in to see alignments".   

Наш сайт: https://fmschool72.ru

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Анастасия Вишницкая

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May 31, 2020, 2:12:22 PM5/31/20
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It doesn't zooms at all and I don't know what chromosome to look at.

воскресенье, 31 мая 2020 г., 19:59:44 UTC+3 пользователь James Robinson написал:
Hello, you need to zoom into a region of 30KB or less to see alignments.   That is what the message means that says "zoom in to see alignments".   

On Sun, May 31, 2020 at 9:16 AM Анастасия Вишницкая <avishn...@fmschool72.ru> wrote:
  1. Hello! I know that the trouble is frequent, but I can't understand
 how to deal with it.
1) Linux Ubuntu (on a virtual mashine), igv 2.8.2
2) I tryed to open file, made by bowtie (both sam and bam)
3) I expected opening the file and seeng at least something.

Безымянный111.png

4) The shot is here. 

Безымянный222.png

5) Another shot.

Please, explain in simple words and add commands, 'cause English is not my native language and my programming skills are poor.

Наш сайт: https://fmschool72.ru

Мы  ВКонтакте и  Instagram

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Анастасия Вишницкая

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May 31, 2020, 2:22:46 PM5/31/20
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UPD. I looked into each cromosome and haven't found any sign of alignments or other data in the files.

воскресенье, 31 мая 2020 г., 21:12:22 UTC+3 пользователь Анастасия Вишницкая написал:
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