[Question] Controlling IGV through a Batch Script

[Zaogul]

Is there any way for me to have an input txt file within a batch script? For example, instead of having to manually input a whole bunch of goto locus commands, can I have it goto a txt file with a list of igv locus coordinates? Is it possible to loop at all using this batch? Are there any commands not listed in this page that I'm missing: https://software.broadinstitute.org/software/igv/PortCommands? Thanks.

[James Robinson]

No, that's not supported.   All supported commands are listed no the page you reference.

On Wed, Jul 18, 2018 at 8:16 AM, Zaogul <emi...@gmail.com> wrote:

Is there any way for me to have an input txt file within a batch script? For example, instead of having to manually input a whole bunch of goto locus commands, can I have it goto a txt file with a list of igv locus coordinates? Is it possible to loop at all using this batch? Are there any commands not listed in this page that I'm missing: https://software.broadinstitute.org/software/igv/PortCommands? Thanks.

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