visualize strand specific

ibg bip

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Aug 10, 2021, 3:21:59 AM8/10/21

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Hello,

I successfully ran the command:

igvtools count -z 5 -w 25 -e 250 --strands read HJWM2BGXJ_H2_RNA_21s002521-1-1_Ozdenyilmaz_lane121s002521_sequence.bam HJWM2BGXJ_H2_RNA_21s002521-1-1_Ozdenyilmaz_lane121s002521_sequence.bam.tdf hg38

I cannot produce output for each strand. Only one TDF output written. How can I visualize strand specific?

Thanks.

ibg bip

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Aug 10, 2021, 3:23:18 AM8/10/21

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On centos 7 x64 and IGV Version 2.4.16 11/17/2018 10:33 PM.

10 Ağustos 2021 Salı tarihinde saat 10:21:59 UTC+3 itibarıyla ibg bip şunları yazdı:

James Robinson

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Aug 10, 2021, 7:01:10 PM8/10/21

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Did you try loading the TDF file? It should produce 2 tracks.

ibg bip

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Aug 11, 2021, 8:34:11 AM8/11/21

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Yes, there are 2 tracks.

11 Ağustos 2021 Çarşamba tarihinde saat 02:01:10 UTC+3 itibarıyla James Robinson şunları yazdı:

ibg bip

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Aug 11, 2021, 8:41:09 AM8/11/21

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Our problem was solved. Sorry for latency.

11 Ağustos 2021 Çarşamba tarihinde saat 15:34:11 UTC+3 itibarıyla ibg bip şunları yazdı:

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