Hello,
I am curious how the autoscale calculates the data range for bigWig vs. tdf files. I understand from
this message that tdf scales to 98th percentile of the currently visible window. For my bigWig files, I'm getting a constant data range for the entire file, no matter which region, but the max of the range varies from 68th-80th percentile. (I used bedGraphToBigWig to convert my data, and ran percentile calculations on the bedGraph, which includes regions with coverage 0.)
I like the autoscaled data ranges, and I'd like to know how they are calculated so I use them in visualizations outside of IGV.
I'm using 2.3.94 in case there have been some recent changes.
Thank you,
Diya