CNV summary track is not working [igv 2.3.92]

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陳小東

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Apr 27, 2017, 1:27:36 AM4/27/17
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i am using igv.2.3.92

first, thanks a million you guys make this wonderful tools!

Here is my question,

the only file i input is 60 sample merge seg file.

and the ref seq i use is hg19 genome

Q1:

i try to export mt cnv summary plot, but i found that i can't add axis and scale axis to 0%,10%,20%~˙75% in whole genome view.

whole genome view just can see the bar and track, even pop up menu you got limited option to scale axis, set threshold of frequency, also log2 ratio threshold.

you can see the result of fig1.

Q2:

when you zoom into chrom, axis appear and you get 0%, 75% ,75% as your axis, but you can see that 75% word is beyond the edge of picture, how to fix that?

also, can i change axis scale to 0%,10%,20%~˙75% in chrome view?


fig_1_CNV_summary_2.png
fig_2_CNV_chrom1_summary.png
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