IGV_Linux_2.19.1_WithJava | Error loading Google oAuth properties

220 views
Skip to first unread message

Narendra Maden

unread,
Dec 19, 2024, 4:19:04 AM12/19/24
to igv-help
I have downloaded the following and trying to open in my Linux machine but it does not work.

IGV_Linux_2.19.1_WithJava

Execution to Error
echo Using bundled JDK.
openjdk version "21.0.4" 2024-07-16 LTS
OpenJDK Runtime Environment Temurin-21.0.4+7 (build 21.0.4+7-LTS)
OpenJDK 64-Bit Server VM Temurin-21.0.4+7 (build 21.0.4+7-LTS, mixed mode, sharing)
WARNING: Unknown module: jide.common specified to --add-exports
WARNING: Unknown module: jide.common specified to --add-exports
WARNING: Unknown module: jide.common specified to --add-exports
WARNING: Unknown module: jide.common specified to --add-exports
WARNING: Unknown module: jide.common specified to --add-exports
WARNING: package com.sun.java.swing.plaf.windows not in java.desktop
WARNING: package sun.awt.windows not in java.desktop
WARNING: Unknown module: jide.common specified to --add-exports
WARNING: Unknown module: jide.common specified to --add-exports
INFO [Dec 19,2024 12:26] [Main] Startup  IGV Version 2.19.1 12/04/2024 02:15 PM
INFO [Dec 19,2024 12:26] [Main] Java 21.0.4 (build 21.0.4+7-LTS) 2024-07-16
INFO [Dec 19,2024 12:26] [Main] Java Vendor: Eclipse Adoptium https://adoptium.net/
INFO [Dec 19,2024 12:26] [Main] JVM: OpenJDK 64-Bit Server VM Temurin-21.0.4+7
INFO [Dec 19,2024 12:26] [Main] OS: Linux 4.18.0-240.1.1.el8_3.x86_64 amd64
INFO [Dec 19,2024 12:26] [Main] IGV Directory: /home/nmaden/igv
INFO [Dec 19,2024 12:26] [OAuthUtils] Loading Google oAuth properties
SEVERE [Dec 19,2024 12:26] [OAuthUtils] Error loading Google oAuth properties
SEVERE [Dec 19,2024 12:26] [OAuthUtils] java.net.UnknownHostException: igv.org
        at java.base/sun.nio.ch.NioSocketImpl.connect(Unknown Source)
        at java.base/java.net.SocksSocketImpl.connect(Unknown Source)
        at java.base/java.net.Socket.connect(Unknown Source)
        at java.base/sun.security.ssl.SSLSocketImpl.connect(Unknown Source)
        at java.base/sun.security.ssl.BaseSSLSocketImpl.connect(Unknown Source)
        at java.base/sun.net.NetworkClient.doConnect(Unknown Source)
        at java.base/sun.net.www.http.HttpClient.openServer(Unknown Source)
        at java.base/sun.net.www.http.HttpClient.openServer(Unknown Source)
        at java.base/sun.net.www.protocol.https.HttpsClient.<init>(Unknown Source)
        at java.base/sun.net.www.protocol.https.HttpsClient.New(Unknown Source)
        at java.base/sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(Unknown Source)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.plainConnect0(Unknown Source)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source)
        at java.base/sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(Unknown Source)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(Unknown Source)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source)
        at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(Unknown Source)
        at org.igv/org.broad.igv.oauth.OAuthUtils.openInputStream(OAuthUtils.java:271)
        at org.igv/org.broad.igv.oauth.OAuthUtils.loadAsString(OAuthUtils.java:177)
        at org.igv/org.broad.igv.oauth.OAuthUtils.loadDefaultOauthProperties(OAuthUtils.java:148)
        at org.igv/org.broad.igv.oauth.OAuthUtils.getGoogleProvider(OAuthUtils.java:127)
        at org.igv/org.broad.igv.ui.IGVMenuBar.createGoogleMenu(IGVMenuBar.java:1062)
        at org.igv/org.broad.igv.ui.IGVMenuBar.createMenus(IGVMenuBar.java:192)
        at org.igv/org.broad.igv.ui.IGVMenuBar.<init>(IGVMenuBar.java:142)
        at org.igv/org.broad.igv.ui.IGVMenuBar.lambda$createInstance$0(IGVMenuBar.java:129)
        at org.igv/org.broad.igv.ui.util.UIUtilities.invokeAndWaitOnEventThread(UIUtilities.java:159)
        at org.igv/org.broad.igv.ui.IGVMenuBar.createInstance(IGVMenuBar.java:129)
        at org.igv/org.broad.igv.ui.IGV.<init>(IGV.java:230)
        at org.igv/org.broad.igv.ui.IGV.createInstance(IGV.java:149)
        at org.igv/org.broad.igv.ui.Main.open(Main.java:294)
        at org.igv/org.broad.igv.ui.Main.lambda$main$0(Main.java:113)
        at java.desktop/java.awt.event.InvocationEvent.dispatch(Unknown Source)
        at java.desktop/java.awt.EventQueue.dispatchEventImpl(Unknown Source)
        at java.desktop/java.awt.EventQueue$4.run(Unknown Source)
        at java.desktop/java.awt.EventQueue$4.run(Unknown Source)
        at java.base/java.security.AccessController.doPrivileged(Unknown Source)
        at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source)
        at java.desktop/java.awt.EventQueue.dispatchEvent(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.run(Unknown Source)

SEVERE [Dec 19,2024 12:26] [MessageUtils] Error loading Google oAuth properties
SEVERE [Dec 19,2024 12:26] [MessageUtils] java.net.UnknownHostException: igv.org
        at java.base/sun.nio.ch.NioSocketImpl.connect(Unknown Source)
        at java.base/java.net.SocksSocketImpl.connect(Unknown Source)
        at java.base/java.net.Socket.connect(Unknown Source)
        at java.base/sun.security.ssl.SSLSocketImpl.connect(Unknown Source)
        at java.base/sun.security.ssl.BaseSSLSocketImpl.connect(Unknown Source)
        at java.base/sun.net.NetworkClient.doConnect(Unknown Source)
        at java.base/sun.net.www.http.HttpClient.openServer(Unknown Source)
        at java.base/sun.net.www.http.HttpClient.openServer(Unknown Source)
        at java.base/sun.net.www.protocol.https.HttpsClient.<init>(Unknown Source)
        at java.base/sun.net.www.protocol.https.HttpsClient.New(Unknown Source)
        at java.base/sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(Unknown Source)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.plainConnect0(Unknown Source)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source)
        at java.base/sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(Unknown Source)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream0(Unknown Source)
        at java.base/sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source)
        at java.base/sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(Unknown Source)
        at org.igv/org.broad.igv.oauth.OAuthUtils.openInputStream(OAuthUtils.java:271)
        at org.igv/org.broad.igv.oauth.OAuthUtils.loadAsString(OAuthUtils.java:177)
        at org.igv/org.broad.igv.oauth.OAuthUtils.loadDefaultOauthProperties(OAuthUtils.java:148)
        at org.igv/org.broad.igv.oauth.OAuthUtils.getGoogleProvider(OAuthUtils.java:127)
        at org.igv/org.broad.igv.ui.IGVMenuBar.createGoogleMenu(IGVMenuBar.java:1062)
        at org.igv/org.broad.igv.ui.IGVMenuBar.createMenus(IGVMenuBar.java:192)
        at org.igv/org.broad.igv.ui.IGVMenuBar.<init>(IGVMenuBar.java:142)
        at org.igv/org.broad.igv.ui.IGVMenuBar.lambda$createInstance$0(IGVMenuBar.java:129)
        at org.igv/org.broad.igv.ui.util.UIUtilities.invokeAndWaitOnEventThread(UIUtilities.java:159)
        at org.igv/org.broad.igv.ui.IGVMenuBar.createInstance(IGVMenuBar.java:129)
        at org.igv/org.broad.igv.ui.IGV.<init>(IGV.java:230)
        at org.igv/org.broad.igv.ui.IGV.createInstance(IGV.java:149)
        at org.igv/org.broad.igv.ui.Main.open(Main.java:294)
        at org.igv/org.broad.igv.ui.Main.lambda$main$0(Main.java:113)
        at java.desktop/java.awt.event.InvocationEvent.dispatch(Unknown Source)
        at java.desktop/java.awt.EventQueue.dispatchEventImpl(Unknown Source)
        at java.desktop/java.awt.EventQueue$4.run(Unknown Source)
        at java.desktop/java.awt.EventQueue$4.run(Unknown Source)
        at java.base/java.security.AccessController.doPrivileged(Unknown Source)
        at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source)
        at java.desktop/java.awt.EventQueue.dispatchEvent(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.desktop/java.awt.EventDispatchThread.run(Unknown Source)

SEVERE [Dec 19,2024 12:26] [MessageUtils] Error loading Google oAuth properties

Thanks

igv-help

unread,
Dec 20, 2024, 10:11:42 AM12/20/24
to igv-help
It appears that you cannot reach https://igv.org.   The application should still open however, after logging this error.    I assume it is not?
Reply all
Reply to author
Forward
0 new messages